ATTED-II : GeneID search result

[←][→] ath At1g12610 Gene

functional annotation

Function

Integrase-type DNA-binding superfamily protein

GO BP

GO:0010371 [list] [network] regulation of gibberellin biosynthetic process	(10 genes)	IMP
GO:0050826 [list] [network] response to freezing	(27 genes)	IMP
GO:0048510 [list] [network] regulation of timing of transition from vegetative to reproductive phase	(43 genes)	IMP
GO:0051510 [list] [network] regulation of unidimensional cell growth	(86 genes)	IMP
GO:0019760 [list] [network] glucosinolate metabolic process	(201 genes)	IMP
GO:0009408 [list] [network] response to heat	(287 genes)	IMP
GO:0009651 [list] [network] response to salt stress	(607 genes)	IGI
GO:0009414 [list] [network] response to water deprivation	(1006 genes)	IMP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1656 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

ISM

GO MF

GO:0000976 [list] [network] transcription cis-regulatory region binding	(708 genes)	IPI
GO:0043565 [list] [network] sequence-specific DNA binding	(890 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1576 genes)	ISS

KEGG

Protein

NP_172721.1

BLAST

NP_172721.1

Orthologous

[Ortholog page] CBF1 (sly) DREB1-like (gma) LOC780571 (tae) CBF2 (ath) DREB1A (ath) CBF1 (ath) CBF4 (ath) ddf2 (ath) LOC4323832 (osa) LOC4330306 (osa) LOC4336721 (osa) LOC7454469 (ppo) LOC7474939 (ppo) LOC7478075 (ppo) LOC7482117 (ppo) LOC7490918 (ppo) LOC11414664 (mtr) LOC11438570 (mtr) LOC11438571 (mtr) LOC11441008 (mtr) LOC18097973 (ppo) LOC25487526 (mtr) LOC25487527 (mtr) LOC25497239 (mtr) LOC25497240 (mtr) LOC25497241 (mtr) LOC25497242 (mtr) LOC25497244 (mtr) LOC25497245 (mtr) LOC25497250 (mtr) LOC25497254 (mtr) LOC25497261 (mtr) LOC25497267 (mtr) LOC100101894 (gma) LOC100779318 (gma) LOC100789097 (gma) LOC100793751 (gma) LOC100795696 (gma) LOC100797582 (gma) LOC100803317 (gma) LOC100810401 (gma) LOC100816109 (gma) LOC100819565 (gma) LOC101246953 (sly) LOC101248897 (sly) LOC101258539 (sly) LOC101263186 (sly) LOC103832651 (bra) LOC103834868 (bra) LOC103834869 (bra) LOC103834870 (bra) LOC103836152 (bra) LOC103838306 (bra) LOC103843116 (bra) LOC103857283 (bra) LOC103861560 (bra) LOC103871989 (bra) LOC104648613 (sly) LOC109119806 (sly) LOC123049720 (tae) LOC123130790 (tae) LOC123134285 (tae) LOC123141644 (tae) LOC123402982 (hvu) LOC123430638 (hvu)

Subcellular
localization
wolf

nucl 9

(predict for NP_172721.1)

Subcellular
localization
TargetP

other 9

(predict for NP_172721.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with DDF1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
15.9	RRTF1	redox responsive transcription factor 1	[detail]	829591
10.3	AT2G17660	RPM1-interacting protein 4 (RIN4) family protein	[detail]	816273
8.7	AT5G52020	Integrase-type DNA-binding superfamily protein	[detail]	835277
7.7	RAS1	RESPONSE TO ABA AND SALT 1	[detail]	837529
7.3	AT1G56660	MAEBL domain protein	[detail]	842121
6.9	CYP94B3	cytochrome P450, family 94, subfamily B, polypeptide 3	[detail]	824011
6.1	AT1G15010	mediator of RNA polymerase II transcription subunit	[detail]	838066
6.0	AT5G38700	cotton fiber protein	[detail]	833860
5.6	AT2G35290	uncharacterized protein	[detail]	818096

Coexpressed
gene list

[Coexpressed gene list for DDF1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

255937_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

255937_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

255937_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	837817
Refseq ID (protein)	NP_172721.1

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