[←][→] ath   At1g13990 Gene
functional annotation
Function   plant/protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0010150 [list] [network] leaf senescence  (195 genes)  IEA  
GO:0009966 [list] [network] regulation of signal transduction  (396 genes)  IEA  
GO:0019748 [list] [network] secondary metabolic process  (766 genes)  IEA  
GO:0009611 [list] [network] response to wounding  (816 genes)  IEA  
GO:0009755 [list] [network] hormone-mediated signaling pathway  (904 genes)  IEA  
GO:0009414 [list] [network] response to water deprivation  (1006 genes)  IEA  
GO:0009737 [list] [network] response to abscisic acid  (1086 genes)  IEA  
GO:1901701 [list] [network] cellular response to oxygen-containing compound  (1115 genes)  IEA  
GO:0019752 [list] [network] carboxylic acid metabolic process  (1307 genes)  IEA  
GO:0098542 [list] [network] defense response to other organism  (2060 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO MF
KEGG
Protein NP_001154334.1  NP_001154335.1  NP_563935.1 
BLAST NP_001154334.1  NP_001154335.1  NP_563935.1 
Orthologous [Ortholog page] LOC4331752 (osa)  LOC7492916 (ppo)  LOC11427768 (mtr)  LOC100789464 (gma)  LOC100789803 (gma)  LOC103872092 (bra)  LOC104644345 (sly)  LOC123084799 (tae)  LOC123093290 (tae)  LOC123098557 (tae)  LOC123449543 (hvu) 
Subcellular
localization
wolf
chlo 8,  chlo_mito 6,  mito 2  (predict for NP_001154334.1)
chlo 6,  chlo_mito 4,  mito 2  (predict for NP_001154335.1)
chlo 9,  chlo_mito 5  (predict for NP_563935.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001154334.1)
chlo 9  (predict for NP_001154335.1)
chlo 9  (predict for NP_563935.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 2
Genes directly connected with AT1G13990 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.7 ERD1 Clp ATPase [detail] 835180
8.6 PPH pheophytinase [detail] 831225
7.4 AT5G47860 Gut esterase (DUF1350) [detail] 834837
6.6 CYP89A9 cytochrome P450, family 87, subfamily A, polypeptide 9 [detail] 821250
6.3 AT5G27280 Zim17-type zinc finger protein [detail] 832786
5.2 SKP2B RNI-like superfamily protein [detail] 844036
Coexpressed
gene list		 [Coexpressed gene list for AT1G13990]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262607_at
262607_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262607_at
262607_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262607_at
262607_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837959      
Refseq ID (protein) NP_001154334.1 
NP_001154335.1 
NP_563935.1 


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