[←][→] ath   AT1G14900 Gene
functional annotation
Function   high mobility group A  
GO BP
GO:0016584 [list] [network] nucleosome positioning  (11 genes)  IBA  
GO:0031936 [list] [network] negative regulation of chromatin silencing  (14 genes)  IBA  
GO:0030261 [list] [network] chromosome condensation  (18 genes)  IBA  
GO:0045910 [list] [network] negative regulation of DNA recombination  (18 genes)  IBA  
GO:0006334 [list] [network] nucleosome assembly  (34 genes)  IEA  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  IBA  
GO CC
GO:0000786 [list] [network] nucleosome  (45 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA IDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA  
GO MF
GO:0031492 [list] [network] nucleosomal DNA binding  (9 genes)  IBA  
GO:0003690 [list] [network] double-stranded DNA binding  (343 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IDA  
KEGG
Protein NP_172943.1 
BLAST NP_172943.1 
Orthologous [Ortholog page] LOC541871 (zma)  LOC548080 (gma)  LOC4345627 (osa)  LOC4347003 (osa)  LOC7459767 (ppo)  LOC7482897 (ppo)  LOC7487391 (ppo)  LOC9268609 (osa)  LOC11410322 (mtr)  LOC11426698 (mtr)  LOC100243851 (vvi)  LOC100244042 (vvi)  LOC100260834 (vvi)  LOC100261585 (vvi)  LOC100262155 (vvi)  LOC100277576 (zma)  LOC100286130 (zma)  LOC100305747 (gma)  LOC100793697 (gma)  LOC100802642 (gma)  LOC100803968 (gma)  LOC100804682 (gma)  LOC101257130 (sly)  LOC101260139 (sly)  LOC101268754 (sly)  LOC103827568 (bra)  LOC103839471 (bra)  LOC103854054 (bra)  LOC104879968 (vvi) 
Subcellular
localization
wolf
nucl 10  (predict for NP_172943.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for NP_172943.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 4
ath03040 Spliceosome 3
Genes directly connected with HMGA on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.9 TUB3 tubulin beta chain 3 [detail] 836391
5.7 HTB4 Histone superfamily protein [detail] 836113
5.6 AT1G14890 Plant invertase/pectin methylesterase inhibitor superfamily protein [detail] 838054
5.0 AT5G44500 Small nuclear ribonucleoprotein family protein [detail] 834477
4.5 WPP1 WPP domain protein 1 [detail] 834323
Coexpressed
gene list		 [Coexpressed gene list for HMGA]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262840_at
262840_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262840_at
262840_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262840_at
262840_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838055      
Refseq ID (protein) NP_172943.1 


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