[←][→] ath   At1g15950 Gene
functional annotation
Function   cinnamoyl coa reductase 1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009809 [list] [network] lignin biosynthetic process  (43 genes)  IDA  
GO:0007623 [list] [network] circadian rhythm  (123 genes)  IEP  
GO:0009409 [list] [network] response to cold  (472 genes)  IEP  
GO CC
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0016621 [list] [network] cinnamoyl-CoA reductase activity  (3 genes)  IDA  
KEGG ath00940 [list] [network] Phenylpropanoid biosynthesis (128 genes)
Protein NP_001077544.1  NP_001319013.1  NP_001322095.1  NP_001322096.1  NP_001322097.1  NP_001322098.1  NP_173047.1 
BLAST NP_001077544.1  NP_001319013.1  NP_001322095.1  NP_001322096.1  NP_001322097.1  NP_001322098.1  NP_173047.1 
Orthologous [Ortholog page] LOC542866 (tae)  LOC543055 (tae)  CCR2 (sly)  CCR2 (ath)  LOC4345689 (osa)  LOC4346438 (osa)  LOC4347074 (osa)  LOC7487058 (ppo)  LOC7493223 (ppo)  LOC11424763 (mtr)  LOC18094265 (ppo)  LOC18094536 (ppo)  LOC18094540 (ppo)  LOC25487973 (mtr)  CCR1 (sly)  LOC100127082 (tae)  LOC100789070 (gma)  CCR (gma)  LOC100799994 (gma)  LOC100811528 (gma)  LOC103832452 (bra)  LOC103853214 (bra)  LOC103872395 (bra)  LOC123103319 (tae)  LOC123112098 (tae)  LOC123120738 (tae)  LOC123167495 (tae)  LOC123167496 (tae)  LOC123398126 (hvu)  LOC123398835 (hvu)  LOC123407421 (hvu)  LOC123409743 (hvu)  LOC123412941 (hvu) 
Subcellular
localization
wolf
cyto 6,  chlo 2,  pero 1  (predict for NP_001077544.1)
cyto 6,  chlo 2,  pero 1  (predict for NP_001319013.1)
cyto 6,  chlo 3,  cyto_nucl 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_001322095.1)
cyto 5,  chlo 4,  pero 1  (predict for NP_001322096.1)
chlo 4,  cyto 4,  pero 1  (predict for NP_001322097.1)
cyto 4,  chlo 4,  pero 2,  cyto_nucl 2,  cyto_E.R. 2,  cyto_plas 2  (predict for NP_001322098.1)
cyto 6,  chlo 2,  pero 1  (predict for NP_173047.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001077544.1)
other 7  (predict for NP_001319013.1)
other 7  (predict for NP_001322095.1)
other 7  (predict for NP_001322096.1)
other 7  (predict for NP_001322097.1)
scret 4,  other 4  (predict for NP_001322098.1)
other 7  (predict for NP_173047.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 13
ath00941 Flavonoid biosynthesis 4
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
ath00360 Phenylalanine metabolism 3
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
Genes directly connected with CCR1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.1 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [detail] 834951
7.2 CYP98A3 cytochrome P450, family 98, subfamily A, polypeptide 3 [detail] 818686
6.3 OMT1 O-methyltransferase 1 [detail] 835504
4.5 AT4G17100 poly(U)-specific endoribonuclease-B protein [detail] 3770328
Coexpressed
gene list		 [Coexpressed gene list for CCR1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261792_at
261792_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261792_at
261792_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261792_at
261792_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838165      
Refseq ID (protein) NP_001077544.1 
NP_001319013.1 
NP_001322095.1 
NP_001322096.1 
NP_001322097.1 
NP_001322098.1 
NP_173047.1 


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