ATTED-II : GeneID search result

[←][→] ath AT1G15950 Gene

functional annotation

Function

cinnamoyl coa reductase 1

GO BP

GO:0009809 [list] [network] lignin biosynthetic process	(47 genes)	IDA
GO:0007623 [list] [network] circadian rhythm	(111 genes)	IEP
GO:0009409 [list] [network] response to cold	(411 genes)	IEP
GO:0055114 [list] [network] oxidation-reduction process	(1468 genes)	IEA

GO CC

GO:0005829 [list] [network] cytosol	(3506 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	ISM

GO MF

GO:0016621 [list] [network] cinnamoyl-CoA reductase activity	(2 genes)	IDA
GO:0050662 [list] [network] coenzyme binding	(416 genes)	IEA

KEGG

ath00940 [list] [network] Phenylpropanoid biosynthesis (166 genes)

Protein

NP_001077544.1 NP_001319013.1 NP_001322095.1 NP_001322096.1 NP_001322097.1 NP_001322098.1 NP_173047.1

BLAST

NP_001077544.1 NP_001319013.1 NP_001322095.1 NP_001322096.1 NP_001322097.1 NP_001322098.1 NP_173047.1

Orthologous

[Ortholog page] LOC542463 (zma) LOC542735 (zma) CCR2 (sly) CCR2 (ath) LOC4345689 (osa) LOC4346438 (osa) LOC4347074 (osa) LOC7493223 (ppo) LOC11424763 (mtr) LOC25487973 (mtr) CCR1 (sly) LOC100251623 (vvi) LOC100789070 (gma) CCR (gma) LOC100799994 (gma) LOC100811528 (gma) LOC103832452 (bra) LOC103842871 (bra) LOC103853214 (bra) LOC103872395 (bra) LOC109946031 (zma)

Subcellular
localization
wolf

cyto 6, chlo 2, pero 1	(predict for NP_001077544.1)
cyto 6, chlo 2, pero 1	(predict for NP_001319013.1)
cyto 6, chlo 3, cyto_nucl 3, cyto_E.R. 3, cyto_plas 3	(predict for NP_001322095.1)
cyto 5, chlo 4, pero 1	(predict for NP_001322096.1)
chlo 4, cyto 4, pero 1	(predict for NP_001322097.1)
cyto 4, chlo 4, pero 2, cyto_nucl 2, cyto_E.R. 2, cyto_plas 2	(predict for NP_001322098.1)
cyto 6, chlo 2, pero 1	(predict for NP_173047.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001077544.1)
other 7	(predict for NP_001319013.1)
other 7	(predict for NP_001322095.1)
other 7	(predict for NP_001322096.1)
other 7	(predict for NP_001322097.1)
scret 4, other 4	(predict for NP_001322098.1)
other 7	(predict for NP_173047.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	11
ath01230	Biosynthesis of amino acids	5
ath00941	Flavonoid biosynthesis	4
ath00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4
ath00999	Biosynthesis of secondary metabolites - unclassified	4

Genes directly connected with CCR1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
7.0	CYP98A3	cytochrome P450, family 98, subfamily A, polypeptide 3	[detail]	818686
6.2	HCT	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase	[detail]	834951
5.7	ADT4	arogenate dehydratase 4	[detail]	823601

Coexpressed
gene list

[Coexpressed gene list for CCR1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

261792_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

261792_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

261792_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	838165
Refseq ID (protein)	NP_001077544.1
	NP_001319013.1
	NP_001322095.1
	NP_001322096.1
	NP_001322097.1
	NP_001322098.1
	NP_173047.1

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