ATTED-II : GeneID search result

[←][→] ath At1g16610 Gene

functional annotation

Function

arginine/serine-rich 45

GO BP

GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome	(8 genes)	IMP
GO:0010182 [list] [network] sugar mediated signaling pathway	(38 genes)	IMP
GO:0000398 [list] [network] mRNA splicing, via spliceosome	(105 genes)	IPI
GO:0008380 [list] [network] RNA splicing	(191 genes)	NAS

GO CC

GO:0016607 [list] [network] nuclear speck	(50 genes)	IDA
GO:0005654 [list] [network] nucleoplasm	(253 genes)	IDA
GO:0005730 [list] [network] nucleolus	(387 genes)	HDA
GO:0005634 [list] [network] nucleus	(10305 genes)	ISM

GO MF

GO:0005515 [list] [network] protein binding

(5066 genes)

IPI

KEGG

ath03013 [list] [network] Nucleocytoplasmic transport (103 genes)

ath03015 [list] [network] mRNA surveillance pathway (119 genes)

Protein

NP_001185014.1 NP_001321125.1 NP_001321126.1 NP_001321127.1 NP_001321128.1 NP_173107.1 NP_973844.1

BLAST

NP_001185014.1 NP_001321125.1 NP_001321126.1 NP_001321127.1 NP_001321128.1 NP_173107.1 NP_973844.1

Orthologous

[Ortholog page] AT1G79100 (ath) LOC4325394 (osa) LOC4337561 (osa) LOC11406805 (mtr) LOC18103443 (ppo) LOC100783566 (gma) LOC100804778 (gma) LOC101257116 (sly) LOC103835996 (bra) LOC103842841 (bra) LOC103872449 (bra) LOC123063510 (tae) LOC123072613 (tae) LOC123080804 (tae) LOC123103420 (tae) LOC123179857 (tae) LOC123185516 (tae) LOC123426013 (hvu) LOC123445573 (hvu)

Subcellular
localization
wolf

nucl 4, mito 4, chlo 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for NP_001185014.1)
nucl 4, mito 4, chlo 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for NP_001321125.1)
nucl 4, mito 4, chlo 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for NP_001321126.1)
nucl 4, mito 4, chlo 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for NP_001321127.1)
nucl 4, mito 4, chlo 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for NP_001321128.1)
nucl 4, mito 4, chlo 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for NP_173107.1)
nucl 4, mito 4, chlo 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2	(predict for NP_973844.1)

Subcellular
localization
TargetP

chlo 9	(predict for NP_001185014.1)
chlo 9	(predict for NP_001321125.1)
chlo 9	(predict for NP_001321126.1)
chlo 9	(predict for NP_001321127.1)
chlo 9	(predict for NP_001321128.1)
chlo 9	(predict for NP_173107.1)
chlo 9	(predict for NP_973844.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath03013	Nucleocytoplasmic transport	3

Genes directly connected with SR45 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
10.4	smB	small nuclear ribonucleoprotein associated protein B	[detail]	827792
9.8	AT2G25970	KH domain-containing protein	[detail]	817137
8.9	MAC5A	CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein	[detail]	837248
8.4	AT4G37130	hydroxyproline-rich glycoprotein family protein	[detail]	829867
7.6	AT4G28990	RNA-binding protein-like protein	[detail]	829020
7.5	SHH2	DNA-BINDING TRANSCRIPTION FACTOR 2	[detail]	821367
7.1	AT4G03120	C2H2 and C2HC zinc fingers superfamily protein	[detail]	828071

Coexpressed
gene list

[Coexpressed gene list for SR45]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

246324_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

246324_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

246324_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	838230
Refseq ID (protein)	NP_001185014.1
	NP_001321125.1
	NP_001321126.1
	NP_001321127.1
	NP_001321128.1
	NP_173107.1
	NP_973844.1

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