ATTED-II : GeneID search result

[←][→] ath At1g19520 Gene

functional annotation

Function

pentatricopeptide (PPR) repeat-containing protein

GO BP

GO:0000741 [list] [network] karyogamy	(32 genes)	IMP
GO:0010197 [list] [network] polar nucleus fusion	(32 genes)	IMP

GO CC

GO:0009507 [list] [network] chloroplast

(5004 genes)

ISM

GO MF

KEGG

Protein

NP_001185038.1 NP_564088.2

BLAST

NP_001185038.1 NP_564088.2

Orthologous

[Ortholog page] LOC4329957 (osa) LOC7477616 (ppo) LOC25482154 (mtr) LOC100794017 (gma) LOC100801933 (gma) LOC101261041 (sly) LOC103872756 (bra) LOC123127680 (tae) LOC123137445 (tae) LOC123144792 (tae) LOC123401353 (hvu)

Subcellular
localization
wolf

chlo 5, chlo_mito 4, mito 3	(predict for NP_001185038.1)
chlo 6, chlo_mito 4, mito 1, cyto_mito 1	(predict for NP_564088.2)

Subcellular
localization
TargetP

mito 5, chlo 5	(predict for NP_001185038.1)
mito 5, chlo 5	(predict for NP_564088.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	3

Genes directly connected with NFD5 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
10.3	AT2G37230	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	818300
8.6	AT3G02760	Class II aaRS and biotin synthetases superfamily protein	[detail]	820930
8.3	AT1G55890	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	842039
7.9	AT5G26710	Glutamyl/glutaminyl-tRNA synthetase, class Ic	[detail]	832718
6.8	AT5G15980	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	831455

Coexpressed
gene list

[Coexpressed gene list for NFD5]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

260670_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

260670_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

260670_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	838538
Refseq ID (protein)	NP_001185038.1
Refseq ID (protein)	NP_564088.2

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