[←][→] ath   At1g20580 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  IMP  
GO:0045087 [list] [network] innate immune response  (161 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (980 genes)  IMP  
GO:0048589 [list] [network] developmental growth  (1060 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_564119.1 
BLAST NP_564119.1 
Orthologous [Ortholog page] SmD3 (ath)  LOC4327991 (osa)  LOC4332206 (osa)  LOC7474576 (ppo)  LOC7494696 (ppo)  LOC11426884 (mtr)  LOC100305856 (gma)  LOC100790315 (gma)  LOC101247792 (sly)  LOC101250657 (sly)  LOC101256541 (sly)  LOC103832082 (bra)  LOC103836270 (bra)  LOC103872847 (bra)  LOC123094041 (tae)  LOC123099240 (tae)  LOC123106193 (tae)  LOC123450034 (hvu) 
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1,  golg 1  (predict for NP_564119.1)
Subcellular
localization
TargetP
other 8  (predict for NP_564119.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 10
ath03018 RNA degradation 4
Genes directly connected with AT1G20580 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.1 SUMO1 small ubiquitin-like modifier 1 [detail] 828791
8.9 AT4G02840 Small nuclear ribonucleoprotein family protein [detail] 828163
8.8 AT2G21290 30S ribosomal protein S31 [detail] 816668
8.7 AT2G47640 Small nuclear ribonucleoprotein family protein [detail] 819377
8.0 SmD3 snRNP core protein SMD3 [detail] 843963
7.7 emb1644 Small nuclear ribonucleoprotein family protein [detail] 832834
7.6 PABN1 polyadenylate-binding protein 1 [detail] 835186
Coexpressed
gene list		 [Coexpressed gene list for AT1G20580]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259543_at
259543_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259543_at
259543_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259543_at
259543_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838647      
Refseq ID (protein) NP_564119.1 


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