[←][→] ath   AT1G20580 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein  
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (17 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IMP  
GO:0048589 [list] [network] developmental growth  (375 genes)  IMP  
GO CC
GO:0034715 [list] [network] pICln-Sm protein complex  (4 genes)  IBA  
GO:0034719 [list] [network] SMN-Sm protein complex  (4 genes)  IBA  
GO:0000243 [list] [network] commitment complex  (7 genes)  IBA  
GO:0005687 [list] [network] U4 snRNP  (9 genes)  IBA  
GO:0005682 [list] [network] U5 snRNP  (15 genes)  IBA  
GO:0005685 [list] [network] U1 snRNP  (17 genes)  IBA  
GO:0005689 [list] [network] U12-type spliceosomal complex  (18 genes)  IBA  
GO:0005686 [list] [network] U2 snRNP  (32 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_564119.1 
BLAST NP_564119.1 
Orthologous [Ortholog page] SmD3 (ath)  LOC4327991 (osa)  LOC4332206 (osa)  LOC7474576 (ppo)  LOC7494696 (ppo)  LOC11426884 (mtr)  LOC100250427 (vvi)  LOC100254787 (vvi)  LOC100284316 (zma)  LOC100285722 (zma)  LOC100305856 (gma)  LOC100790315 (gma)  LOC101247792 (sly)  LOC101250657 (sly)  LOC101256541 (sly)  LOC103633373 (zma)  LOC103832082 (bra)  LOC103836270 (bra)  LOC103872847 (bra)  LOC109124003 (vvi) 
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1,  golg 1  (predict for NP_564119.1)
Subcellular
localization
TargetP
other 8  (predict for NP_564119.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
ath03040 Spliceosome 6
ath03018 RNA degradation 2
Genes directly connected with AT1G20580 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.1 AT4G02840 Small nuclear ribonucleoprotein family protein [detail] 828163
8.0 AT2G47640 Small nuclear ribonucleoprotein family protein [detail] 819377
7.5 AT3G60245 Zinc-binding ribosomal protein family protein [detail] 825195
7.0 emb1644 Small nuclear ribonucleoprotein family protein [detail] 832834
6.7 CBP20 CAP-binding protein 20 [detail] 834443
Coexpressed
gene list		 [Coexpressed gene list for AT1G20580]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259543_at
259543_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259543_at
259543_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259543_at
259543_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838647      
Refseq ID (protein) NP_564119.1 


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