[←][→] ath   AT1G21190 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein  
GO BP
GO:0033962 [list] [network] cytoplasmic mRNA processing body assembly  (11 genes)  IBA  
GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process  (71 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (7 genes)  IBA  
GO:0005688 [list] [network] U6 snRNP  (11 genes)  IBA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (27 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0000932 [list] [network] P-body  (56 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  HDA ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_173542.1 
BLAST NP_173542.1 
Orthologous [Ortholog page] LSM3B (ath)  LOC4325074 (osa)  LOC7469218 (ppo)  LOC11446185 (mtr)  LOC100194361 (zma)  LOC100253870 (vvi)  LOC100306547 (gma)  LOC100499782 (gma)  LOC101264277 (sly)  LOC103830597 (bra)  LOC103832139 (bra)  LOC103853050 (bra)  LOC103872911 (bra) 
Subcellular
localization
wolf
cyto 6,  extr 2,  chlo 1,  E.R. 1,  cysk 1  (predict for NP_173542.1)
Subcellular
localization
TargetP
other 8  (predict for NP_173542.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03020 RNA polymerase 2
Genes directly connected with LSM3A on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.8 AT2G39500 hexose transporter [detail] 818535
5.8 NRPB12 DNA directed RNA polymerase, 7 kDa subunit [detail] 834103
5.6 AT3G07590 Small nuclear ribonucleoprotein family protein [detail] 819950
4.4 AT4G32240 hypothetical protein [detail] 829357
Coexpressed
gene list		 [Coexpressed gene list for LSM3A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259551_at
259551_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259551_at
259551_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259551_at
259551_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838714      
Refseq ID (protein) NP_173542.1 


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