[←][→] ath   AT1G21410 Gene
functional annotation
Function   F-box/RNI-like superfamily protein  
GO BP
GO:0051781 [list] [network] positive regulation of cell division  (14 genes)  IMP  
GO:0010311 [list] [network] lateral root formation  (55 genes)  IMP  
GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  (66 genes)  IBA IDA IPI  
GO:0009734 [list] [network] auxin-activated signaling pathway  (196 genes)  IEA  
GO:0071365 [list] [network] cellular response to auxin stimulus  (215 genes)  IDA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (436 genes)  IBA  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IDA IEA  
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (68 genes)  IBA IDA IPI  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (434 genes)  IBA IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (143 genes)
Protein NP_001321134.1  NP_564139.1 
BLAST NP_001321134.1  NP_564139.1 
Orthologous [Ortholog page] SKP2B (ath)  LOC4324993 (osa)  LOC4338850 (osa)  LOC7466433 (ppo)  LOC7469194 (ppo)  LOC25482432 (mtr)  LOC25489745 (mtr)  LOC100255759 (vvi)  LOC100274332 (zma)  LOC100274363 (zma)  LOC100788845 (gma)  LOC100793275 (gma)  LOC100797840 (gma)  LOC100818928 (gma)  LOC101254991 (sly)  LOC103830576 (bra)  LOC103832158 (bra)  LOC103835748 (bra) 
Subcellular
localization
wolf
cyto 4,  chlo 3,  nucl 3  (predict for NP_001321134.1)
cyto 4,  chlo 3,  nucl 3  (predict for NP_564139.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001321134.1)
other 9  (predict for NP_564139.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00350 Tyrosine metabolism 3
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath00270 Cysteine and methionine metabolism 2
ath00360 Phenylalanine metabolism 2
Genes directly connected with SKP2A on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.4 AT1G79520 Cation efflux family protein [detail] 844290
5.1 TAT7 Tyrosine transaminase family protein [detail] 835480
5.1 ARD4 RmlC-like cupins superfamily protein [detail] 834407
Coexpressed
gene list		 [Coexpressed gene list for SKP2A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260875_at
260875_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260875_at
260875_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260875_at
260875_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838740      
Refseq ID (protein) NP_001321134.1 
NP_564139.1 


The preparation time of this page was 0.2 [sec].