[←][→] ath   At1g21410 Gene
functional annotation
Function   F-box/RNI-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  (7 genes)  IDA IPI  
GO:0051781 [list] [network] positive regulation of cell division  (16 genes)  IMP  
GO:0010311 [list] [network] lateral root formation  (59 genes)  IMP  
GO:0071365 [list] [network] cellular response to auxin stimulus  (88 genes)  IDA  
GO:0016567 [list] [network] protein ubiquitination  (434 genes)  IDA  
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (41 genes)  IDA IPI  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (261 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (155 genes)
Protein NP_001321134.1  NP_564139.1 
BLAST NP_001321134.1  NP_564139.1 
Orthologous [Ortholog page] SKP2B (ath)  LOC4324993 (osa)  LOC4338850 (osa)  LOC7466433 (ppo)  LOC7469194 (ppo)  LOC25482432 (mtr)  LOC25489745 (mtr)  LOC100788845 (gma)  LOC100793275 (gma)  LOC100797840 (gma)  LOC100818928 (gma)  LOC101254991 (sly)  LOC103830576 (bra)  LOC103832158 (bra)  LOC103835748 (bra)  LOC121173056 (gma)  LOC123056689 (tae)  LOC123062952 (tae)  LOC123071814 (tae)  LOC123080143 (tae)  LOC123133972 (tae)  LOC123182089 (tae)  LOC123443034 (hvu)  LOC123445130 (hvu) 
Subcellular
localization
wolf
cyto 4,  chlo 3,  nucl 3  (predict for NP_001321134.1)
cyto 4,  chlo 3,  nucl 3  (predict for NP_564139.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001321134.1)
other 9  (predict for NP_564139.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00350 Tyrosine metabolism 3
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath00270 Cysteine and methionine metabolism 2
ath00360 Phenylalanine metabolism 2
Genes directly connected with SKP2A on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.7 TAT7 Tyrosine transaminase family protein [detail] 835480
5.7 AT1G79520 Cation efflux family protein [detail] 844290
5.1 ARD4 RmlC-like cupins superfamily protein [detail] 834407
Coexpressed
gene list		 [Coexpressed gene list for SKP2A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260875_at
260875_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260875_at
260875_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260875_at
260875_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838740      
Refseq ID (protein) NP_001321134.1 
NP_564139.1 


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