[←][→] ath   At1g21880 Gene
functional annotation
Function   lysm domain GPI-anchored protein 1 precursor    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006955 [list] [network] immune response  (182 genes)  IMP  
GO CC
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA IDA  
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO:0016020 [list] [network] membrane  (3629 genes)  TAS  
GO:0005634 [list] [network] nucleus  (10305 genes)  HDA  
GO MF
GO:0042834 [list] [network] peptidoglycan binding  (2 genes)  IDA  
KEGG
Protein NP_564153.1  NP_849697.1 
BLAST NP_564153.1  NP_849697.1 
Orthologous [Ortholog page] LYM3 (ath)  LOC4330856 (osa)  LOC4340448 (osa)  LOC7460946 (ppo)  LOC7463162 (ppo)  LOC11418012 (mtr)  LOC100777292 (gma)  LOC100808966 (gma)  LOC101245017 (sly)  LOC103835725 (bra)  LOC103853085 (bra)  LOC103873027 (bra)  LOC123131052 (tae)  LOC123134644 (tae)  LOC123134648 (tae)  LOC123141876 (tae)  LOC123149871 (tae)  LOC123157352 (tae)  LOC123165948 (tae)  LOC123401743 (hvu)  LOC123410788 (hvu) 
Subcellular
localization
wolf
plas 4,  extr 2,  nucl_plas 2,  cysk_plas 2,  mito_plas 2,  cyto_plas 2  (predict for NP_564153.1)
extr 6,  vacu 2,  chlo 1,  mito 1,  E.R. 1,  chlo_mito 1  (predict for NP_849697.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_564153.1)
scret 9  (predict for NP_849697.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03420 Nucleotide excision repair 3
ath03030 DNA replication 2
ath03410 Base excision repair 2
ath03440 Homologous recombination 2
Genes directly connected with LYM1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.4 SVL1 SHV3-like 1 [detail] 835641
7.4 FLA8 FASCICLIN-like arabinogalactan protein 8 [detail] 819155
7.2 LYM3 Peptidoglycan-binding LysM domain-containing protein [detail] 844098
5.4 CDKD1;3 cyclin-dependent kinase D1;3 [detail] 838384
Coexpressed
gene list		 [Coexpressed gene list for LYM1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260857_at
260857_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260857_at
260857_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260857_at
260857_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838790      
Refseq ID (protein) NP_564153.1 
NP_849697.1 


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