[←][→] ath   AT1G22760 Gene
functional annotation
Function   poly(A) binding protein 3  
GO BP
GO:0060211 [list] [network] regulation of nuclear-transcribed mRNA poly(A) tail shortening  (3 genes)  IDA  
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (19 genes)  IEA  
GO:0006417 [list] [network] regulation of translation  (146 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IGI  
GO CC
GO:1990904 [list] [network] ribonucleoprotein complex  (690 genes)  IBA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  HDA IBA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0003730 [list] [network] mRNA 3'-UTR binding  (14 genes)  IBA  
GO:0008143 [list] [network] poly(A) binding  (19 genes)  IBA  
GO:0008266 [list] [network] poly(U) RNA binding  (28 genes)  IBA  
GO:0003743 [list] [network] translation initiation factor activity  (95 genes)  ISS  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03013 [list] [network] RNA transport (171 genes)
ath03015 [list] [network] mRNA surveillance pathway (115 genes)
ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_173690.1 
BLAST NP_173690.1 
Orthologous [Ortholog page] PAB4 (ath)  PAB2 (ath)  PAB8 (ath)  PAB5 (ath)  LOC4336331 (osa)  LOC4341408 (osa)  LOC4345242 (osa)  LOC4346409 (osa)  LOC7467793 (ppo)  LOC7490046 (ppo)  LOC7492048 (ppo)  LOC7492495 (ppo)  LOC11419187 (mtr)  LOC11429679 (mtr)  LOC11445084 (mtr)  LOC25485028 (mtr)  LOC25496270 (mtr)  LOC100241923 (vvi)  LOC100255846 (vvi)  LOC100262903 (vvi)  LOC100263065 (vvi)  LOC100285420 (zma)  LOC100381531 (zma)  LOC100383542 (zma)  LOC100502035 (zma)  LOC100778879 (gma)  LOC100780329 (gma)  LOC100783163 (gma)  LOC100784442 (gma)  LOC100798998 (gma)  LOC100808877 (gma)  LOC100811385 (gma)  LOC100813735 (gma)  LOC101258105 (sly)  LOC101261596 (sly)  LOC101264108 (sly)  LOC103641822 (zma)  LOC103830833 (bra)  LOC103831686 (bra)  LOC103834441 (bra)  LOC103835691 (bra)  LOC103842244 (bra)  LOC103842418 (bra)  LOC103844362 (bra)  LOC103860422 (bra)  LOC103871402 (bra) 
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for NP_173690.1)
Subcellular
localization
TargetP
other 3,  chlo 3  (predict for NP_173690.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 2
ath00500 Starch and sucrose metabolism 2
ath03013 RNA transport 2
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
Genes directly connected with PAB3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.8 AT4G08670 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [detail] 826433
6.4 AT3G28790 transmembrane protein, putative (DUF1216) [detail] 822511
5.9 AT1G23240 Caleosin-related family protein [detail] 838933
5.8 STP9 sugar transporter 9 [detail] 841453
5.5 PAB5 poly(A)-binding protein 5 [detail] 843507
4.8 CALS5 callose synthase 5 [detail] 815852
Coexpressed
gene list		 [Coexpressed gene list for PAB3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264208_at
264208_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264208_at
264208_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264208_at
264208_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838882      
Refseq ID (protein) NP_173690.1 


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