[←][→] ath   AT1G23820 Gene
functional annotation
Function   spermidine synthase  
GO BP
GO:0008295 [list] [network] spermidine biosynthetic process  (8 genes)  IDA IEA  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  HDA ISM  
GO MF
GO:0004766 [list] [network] spermidine synthase activity  (3 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00270 [list] [network] Cysteine and methionine metabolism (121 genes)
ath00330 [list] [network] Arginine and proline metabolism (54 genes)
ath00480 [list] [network] Glutathione metabolism (102 genes)
Protein NP_173794.3  NP_973900.2 
BLAST NP_173794.3  NP_973900.2 
Orthologous [Ortholog page] SPDSY (sly)  SPDS2 (ath)  LOC4342996 (osa)  LOC7459055 (ppo)  LOC11405952 (mtr)  LOC25501297 (mtr)  LOC100243226 (vvi)  LOC100257112 (vvi)  LOC100272866 (zma)  LOC100282908 (zma)  LOC100776863 (gma)  LOC100788406 (gma)  LOC100790506 (gma)  LOC100792085 (gma)  LOC100792107 (gma)  LOC100809346 (gma)  LOC100812978 (gma)  LOC101263807 (sly)  LOC103829257 (bra)  LOC103835646 (bra)  LOC103840733 (bra) 
Subcellular
localization
wolf
cyto 3,  chlo 2,  extr 2,  mito 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for NP_173794.3)
chlo 4,  cyto 3,  plas 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_973900.2)
Subcellular
localization
TargetP
other 9  (predict for NP_173794.3)
mito 6,  chlo 3  (predict for NP_973900.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 6
ath03010 Ribosome 4
ath00270 Cysteine and methionine metabolism 4
ath01210 2-Oxocarboxylic acid metabolism 4
ath00290 Valine, leucine and isoleucine biosynthesis 3
Genes directly connected with SPDS1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.9 SPDS2 spermidine synthase 2 [detail] 843367
5.9 RAN3 RAN GTPase 3 [detail] 835612
5.8 OTC ornithine carbamoyltransferase [detail] 843869
Coexpressed
gene list		 [Coexpressed gene list for SPDS1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
265172_at
265172_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
265172_at
265172_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
265172_at
265172_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838993      
Refseq ID (protein) NP_173794.3 
NP_973900.2 


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