ATTED-II : GeneID search result

[←][→] ath AT1G28530 Gene

functional annotation

Function

deneddylase

GO BP

GO:1903866 [list] [network] palisade mesophyll development	(2 genes)	IMP
GO:0090391 [list] [network] granum assembly	(4 genes)	IMP
GO:0010027 [list] [network] thylakoid membrane organization	(49 genes)	IMP

GO CC

GO:0009507 [list] [network] chloroplast

(5095 genes)

IDA ISM

GO MF

KEGG

Protein

NP_174175.2 NP_973929.2

BLAST

NP_174175.2 NP_973929.2

Orthologous

[Ortholog page] LOC4328038 (osa) LOC7476365 (ppo) LOC11443315 (mtr) LOC100248663 (vvi) LOC100782020 (gma) LOC100785118 (gma) LOC101254664 (sly) LOC103626515 (zma) LOC103835314 (bra)

Subcellular
localization
wolf

chlo 8, mito 1	(predict for NP_174175.2)
chlo 8, mito 1	(predict for NP_973929.2)

Subcellular
localization
TargetP

chlo 9	(predict for NP_174175.2)
chlo 9	(predict for NP_973929.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT1G28530 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.3	AT1G48570	zinc finger (Ran-binding) family protein	[detail]	841278
8.2	AT4G31210	DNA topoisomerase, type IA, core	[detail]	829248
8.1	Cpn60alpha2	TCP-1/cpn60 chaperonin family protein	[detail]	832000
5.2	AT3G54970	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein	[detail]	824662

Coexpressed
gene list

[Coexpressed gene list for AT1G28530]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

262738_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

262738_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

262738_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	839753
Refseq ID (protein)	NP_174175.2
Refseq ID (protein)	NP_973929.2

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