[←][→] ath   At1g29850 Gene
functional annotation
Function   double-stranded DNA-binding family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0012501 [list] [network] programmed cell death  (87 genes)  IMP  
GO:0006281 [list] [network] DNA repair  (203 genes)  IMP  
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  HDA IDA  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (9 genes)  IMP  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001319109.1  NP_564336.1  NP_849728.1 
BLAST NP_001319109.1  NP_564336.1  NP_849728.1 
Orthologous [Ortholog page] LOC9269971 (osa)  LOC18095295 (ppo)  LOC25493385 (mtr)  LOC100305716 (gma)  LOC100786356 (gma)  LOC101265990 (sly)  LOC103828923 (bra)  LOC103835253 (bra)  LOC103840456 (bra)  LOC112939070 (osa)  LOC123065791 (tae)  LOC123143360 (tae)  LOC123182873 (tae)  LOC123447841 (hvu) 
Subcellular
localization
wolf
cyto 5,  nucl 2,  cyto_E.R. 2,  cysk_nucl 1  (predict for NP_001319109.1)
nucl 4,  mito 3,  cyto 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_564336.1)
nucl 5,  cyto 2,  mito 2  (predict for NP_849728.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001319109.1)
other 7  (predict for NP_564336.1)
other 7  (predict for NP_849728.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath04626 Plant-pathogen interaction 2
ath03020 RNA polymerase 2
ath04144 Endocytosis 2
Genes directly connected with AT1G29850 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.0 I-2 phosphoprotein phosphatase inhibitor [detail] 835296
7.8 NRPB6A RNA polymerase Rpb6 [detail] 835269
7.8 emb1644 Small nuclear ribonucleoprotein family protein [detail] 832834
7.6 SYP61 syntaxin of plants 61 [detail] 839749
5.4 VPS25 E2F/DP family winged-helix DNA-binding domain-containing protein [detail] 827637
Coexpressed
gene list		 [Coexpressed gene list for AT1G29850]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256001_at
256001_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256001_at
256001_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256001_at
256001_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839863      
Refseq ID (protein) NP_001319109.1 
NP_564336.1 
NP_849728.1 


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