[←][→] ath   At1g30460 Gene
functional annotation
Function   cleavage and polyadenylation specificity factor 30    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1900363 [list] [network] regulation of mRNA polyadenylation  (4 genes)  IMP  
GO:0006378 [list] [network] mRNA polyadenylation  (8 genes)  IMP  
GO:0034052 [list] [network] positive regulation of plant-type hypersensitive response  (10 genes)  IMP  
GO:0031124 [list] [network] mRNA 3'-end processing  (11 genes)  IMP  
GO:0043068 [list] [network] positive regulation of programmed cell death  (24 genes)  IMP  
GO:2000031 [list] [network] regulation of salicylic acid mediated signaling pathway  (31 genes)  IMP  
GO:0006979 [list] [network] response to oxidative stress  (545 genes)  IMP  
GO:0006396 [list] [network] RNA processing  (567 genes)  IDA TAS  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (3 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0004521 [list] [network] endoribonuclease activity  (82 genes)  IDA  
GO:0004519 [list] [network] endonuclease activity  (108 genes)  IDA  
GO:0005516 [list] [network] calmodulin binding  (128 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA IDA  
GO:0003723 [list] [network] RNA binding  (1729 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
Protein NP_001319113.1  NP_001321474.1  NP_174334.2 
BLAST NP_001319113.1  NP_001321474.1  NP_174334.2 
Orthologous [Ortholog page] LOC4341840 (osa)  LOC7483632 (ppo)  LOC7487514 (ppo)  LOC25486300 (mtr)  LOC100787159 (gma)  LOC100802826 (gma)  LOC101254355 (sly)  LOC101263950 (sly)  LOC103835212 (bra)  LOC123149073 (tae)  LOC123157286 (tae)  LOC123165299 (tae)  LOC123407783 (hvu) 
Subcellular
localization
wolf
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_001319113.1)
chlo 3,  nucl 3,  cyto 2,  nucl_plas 2  (predict for NP_001321474.1)
nucl 10  (predict for NP_174334.2)
Subcellular
localization
TargetP
other 8,  chlo 4  (predict for NP_001319113.1)
other 8,  chlo 4  (predict for NP_001321474.1)
other 8,  chlo 4  (predict for NP_174334.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03015 mRNA surveillance pathway 2
Genes directly connected with CPSF30 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.8 U1-70K U1 small nuclear ribonucleoprotein-70K [detail] 824230
7.8 AT1G07615 GTP-binding protein Obg/CgtA [detail] 5007670
6.4 SE C2H2 zinc-finger protein SERRATE (SE) [detail] 817252
6.1 AT3G54970 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein [detail] 824662
Coexpressed
gene list		 [Coexpressed gene list for CPSF30]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261798_at
261798_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261798_at
261798_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261798_at
261798_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839925      
Refseq ID (protein) NP_001319113.1 
NP_001321474.1 
NP_174334.2 


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