[←][→] ath   AT1G36370 Gene
functional annotation
Function   serine hydroxymethyltransferase 7  
GO BP
GO:0055063 [list] [network] sulfate ion homeostasis  (2 genes)  IMP  
GO:0006565 [list] [network] L-serine catabolic process  (7 genes)  IBA  
GO:0019264 [list] [network] glycine biosynthetic process from serine  (7 genes)  IBA  
GO:1904482 [list] [network] cellular response to tetrahydrofolate  (7 genes)  IBA  
GO:0046500 [list] [network] S-adenosylmethionine metabolic process  (8 genes)  IMP  
GO:0046655 [list] [network] folic acid metabolic process  (13 genes)  IBA  
GO:0035999 [list] [network] tetrahydrofolate interconversion  (14 genes)  IEA  
GO:0044030 [list] [network] regulation of DNA methylation  (15 genes)  IMP  
GO:0006544 [list] [network] glycine metabolic process  (17 genes)  IBA  
GO:0006730 [list] [network] one-carbon metabolic process  (29 genes)  IBA  
GO:0046653 [list] [network] tetrahydrofolate metabolic process  (29 genes)  IBA  
GO:0046686 [list] [network] response to cadmium ion  (346 genes)  IEP  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IEA  
GO MF
GO:0004372 [list] [network] glycine hydroxymethyltransferase activity  (7 genes)  IBA  
GO:0070905 [list] [network] serine binding  (7 genes)  IBA  
GO:0016597 [list] [network] amino acid binding  (26 genes)  IBA  
GO:0050897 [list] [network] cobalt ion binding  (51 genes)  IBA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (84 genes)  IBA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IBA  
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00460 [list] [network] Cyanoamino acid metabolism (69 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00670 [list] [network] One carbon pool by folate (20 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_564473.1 
BLAST NP_564473.1 
Orthologous [Ortholog page] SHM6 (ath)  LOC4324773 (osa)  LOC4338868 (osa)  LOC11420162 (mtr)  LOC11424199 (mtr)  LOC100191532 (zma)  LOC100241225 (vvi)  LOC100267713 (vvi)  LOC100286146 (zma)  LOC100776419 (gma)  LOC100793208 (gma)  LOC100799472 (gma)  LOC100810926 (gma)  LOC101250548 (sly)  LOC103833575 (bra)  LOC103869084 (bra) 
Subcellular
localization
wolf
chlo 4,  nucl 3,  chlo_mito 3  (predict for NP_564473.1)
Subcellular
localization
TargetP
chlo 2  (predict for NP_564473.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00920 Sulfur metabolism 5
ath01200 Carbon metabolism 2
ath01230 Biosynthesis of amino acids 2
Genes directly connected with SHM7 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
18.8 AT1G04770 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 839418
18.4 ATSDI1 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 834943
18.0 APR3 APS reductase 3 [detail] 828288
14.5 APR1 APS reductase 1 [detail] 825793
14.0 LSU1 response to low sulfur 1 [detail] 824120
13.5 SULTR4;2 sulfate transporter 4;2 [detail] 820431
12.7 APR2 5'adenylylphosphosulfate reductase 2 [detail] 842514
11.2 AT3G56200 Transmembrane amino acid transporter family protein [detail] 824786
10.2 SULTR4;1 sulfate transporter 4.1 [detail] 831199
8.9 AT4G20820 FAD-binding Berberine family protein [detail] 827830
8.8 AT5G40670 PQ-loop repeat family protein / transmembrane family protein [detail] 834067
8.0 AT3G05165 Major facilitator superfamily protein [detail] 819680
7.5 AT1G75280 NmrA-like negative transcriptional regulator family protein [detail] 843865
7.4 SULTR1;2 sulfate transporter 1;2 [detail] 844135
6.1 SBP1 selenium-binding protein 1 [detail] 827039
Coexpressed
gene list		 [Coexpressed gene list for SHM7]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260126_at
260126_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260126_at
260126_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260126_at
260126_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 840543      
Refseq ID (protein) NP_564473.1 


The preparation time of this page was 0.3 [sec].