ATTED-II : GeneID search result

[←][→] ath AT1G43170 Gene

functional annotation

Function

ribosomal protein 1

GO BP

GO:0000027 [list] [network] ribosomal large subunit assembly	(33 genes)	IBA
GO:0009793 [list] [network] embryo development ending in seed dormancy	(547 genes)	NAS
GO:0006412 [list] [network] translation	(1149 genes)	IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(136 genes)	IBA IDA TAS
GO:0022626 [list] [network] cytosolic ribosome	(317 genes)	IDA
GO:0005730 [list] [network] nucleolus	(477 genes)	IDA
GO:0005774 [list] [network] vacuolar membrane	(624 genes)	IDA
GO:0005618 [list] [network] cell wall	(685 genes)	IDA
GO:0009506 [list] [network] plasmodesma	(962 genes)	IDA
GO:0005773 [list] [network] vacuole	(1133 genes)	IDA
GO:0005794 [list] [network] Golgi apparatus	(1430 genes)	RCA
GO:0005829 [list] [network] cytosol	(3506 genes)	IDA
GO:0005886 [list] [network] plasma membrane	(3771 genes)	IDA
GO:0005634 [list] [network] nucleus	(10793 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	ISM

GO MF

GO:0003735 [list] [network] structural constituent of ribosome	(248 genes)	IBA
GO:0003729 [list] [network] mRNA binding	(1026 genes)	IDA

KEGG

ath03010 [list] [network] Ribosome (356 genes)

Protein

NP_001031146.1 NP_001077671.1 NP_001185148.1 NP_001185149.1 NP_001185150.1 NP_001185151.1 NP_001185152.1 NP_175009.1 NP_973966.1

BLAST

NP_001031146.1 NP_001077671.1 NP_001185148.1 NP_001185149.1 NP_001185150.1 NP_001185151.1 NP_001185152.1 NP_175009.1 NP_973966.1

Orthologous

[Ortholog page] RPL3 (sly) RPL3B (ath) LOC4351604 (osa) LOC7468770 (ppo) LOC7492475 (ppo) LOC11428007 (mtr) LOC25493328 (mtr) LOC100192516 (zma) LOC100260533 (vvi) LOC100267716 (vvi) LOC100782902 (gma) LOC100792174 (gma) LOC100806256 (gma) LOC100819132 (gma) LOC101027258 (zma) LOC101266871 (sly) LOC103646454 (zma) LOC103647029 (zma) LOC103647030 (zma) LOC103827694 (bra) LOC103827695 (bra) LOC103830735 (bra) LOC103848547 (bra) LOC103849653 (bra)

Subcellular
localization
wolf

chlo 4, cyto 3, E.R. 1, cyto_nucl 1, cyto_pero 1, cyto_plas 1	(predict for NP_001031146.1)
cyto 8, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1	(predict for NP_001077671.1)
chlo 4, cyto 3, E.R. 1, cyto_nucl 1, cyto_pero 1, cyto_plas 1	(predict for NP_001185148.1)
chlo 4, cyto 3, E.R. 1, cyto_nucl 1, cyto_pero 1, cyto_plas 1	(predict for NP_001185149.1)
chlo 4, cyto 3, E.R. 1, cyto_nucl 1, cyto_pero 1, cyto_plas 1	(predict for NP_001185150.1)
chlo 4, cyto 3, E.R. 1, cyto_nucl 1, cyto_pero 1, cyto_plas 1	(predict for NP_001185151.1)
chlo 4, cyto 3, E.R. 1, cyto_nucl 1, cyto_pero 1, cyto_plas 1	(predict for NP_001185152.1)
chlo 4, cyto 3, E.R. 1, cyto_nucl 1, cyto_pero 1, cyto_plas 1	(predict for NP_175009.1)
chlo 4, cyto 3, E.R. 1, cyto_nucl 1, cyto_pero 1, cyto_plas 1	(predict for NP_973966.1)

Subcellular
localization
TargetP

other 4, mito 3	(predict for NP_001031146.1)
mito 7, other 3	(predict for NP_001077671.1)
other 4, mito 3	(predict for NP_001185148.1)
other 4, mito 3	(predict for NP_001185149.1)
other 4, mito 3	(predict for NP_001185150.1)
other 4, mito 3	(predict for NP_001185151.1)
other 4, mito 3	(predict for NP_001185152.1)
other 4, mito 3	(predict for NP_175009.1)
other 4, mito 3	(predict for NP_973966.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21

Genes directly connected with RP1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
12.6	EMB3010	Ribosomal protein S6e	[detail]	830900
11.7	AT5G02960	Ribosomal protein S12/S23 family protein	[detail]	831724
11.7	AT2G47610	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[detail]	819374
10.6	AT4G36130	Ribosomal protein L2 family	[detail]	829770

Coexpressed
gene list

[Coexpressed gene list for RP1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

264421_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

264421_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

264421_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	840916
Refseq ID (protein)	NP_001031146.1
	NP_001077671.1
	NP_001185148.1
	NP_001185149.1
	NP_001185150.1
	NP_001185151.1
	NP_001185152.1
	NP_175009.1
	NP_973966.1

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