[←][→] ath   At1g48460 Gene
functional annotation
Function   tRNA-processing ribonuclease BN    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  ISM  
GO:0009536 [list] [network] plastid  (5425 genes)  HDA  
GO MF
KEGG
Protein NP_001321062.1  NP_175279.1 
BLAST NP_001321062.1  NP_175279.1 
Orthologous [Ortholog page] LOC18104980 (ppo)  LOC25490165 (mtr)  LOC100780682 (gma)  LOC100805065 (gma)  LOC101244367 (sly)  LOC103833001 (bra) 
Subcellular
localization
wolf
chlo 9  (predict for NP_001321062.1)
chlo 5,  plas 2,  E.R. 2,  E.R._plas 2  (predict for NP_175279.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001321062.1)
chlo 8  (predict for NP_175279.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT1G48460 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
11.6 AT1G48570 zinc finger (Ran-binding) family protein [detail] 841278
8.7 AT3G56330 N2,N2-dimethylguanosine tRNA methyltransferase [detail] 824800
8.5 AT1G78930 Mitochondrial transcription termination factor family protein [detail] 844232
7.9 AT1G28530 deneddylase [detail] 839753
7.9 EMB2001 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 816818
6.9 TK1b Thymidine kinase [detail] 832371
6.7 Tic22-III Tic22-like family protein [detail] 821952
6.1 AT3G20240 Mitochondrial substrate carrier family protein [detail] 821568
5.5 AT2G26840 MutS2 [detail] 817225
5.4 LYM3 Peptidoglycan-binding LysM domain-containing protein [detail] 844098
Coexpressed
gene list		 [Coexpressed gene list for AT1G48460]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261296_at
261296_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261296_at
261296_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261296_at
261296_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841267      
Refseq ID (protein) NP_001321062.1 
NP_175279.1 


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