[←][→] ath   AT1G51680 Gene
functional annotation
Function   4-coumarate:CoA ligase 1  
GO BP
GO:0009411 [list] [network] response to UV  (120 genes)  IEP  
GO:0009698 [list] [network] phenylpropanoid metabolic process  (124 genes)  TAS  
GO:0009611 [list] [network] response to wounding  (212 genes)  IEP  
GO:0009620 [list] [network] response to fungus  (595 genes)  IEP  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0016207 [list] [network] 4-coumarate-CoA ligase activity  (13 genes)  IDA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG ath00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (38 genes)
ath00940 [list] [network] Phenylpropanoid biosynthesis (166 genes)
ath00999 [list] [network] Biosynthesis of secondary metabolites - unclassified (12 genes)
Protein NP_001077697.1  NP_175579.1  NP_849793.1 
BLAST NP_001077697.1  NP_175579.1  NP_849793.1 
Orthologous [Ortholog page] LOC542166 (zma)  4CL2 (gma)  4CL2 (ath)  LOC4328485 (osa)  LOC4341718 (osa)  LOC4345054 (osa)  LOC4345717 (osa)  LOC11429318 (mtr)  LOC25488009 (mtr)  LOC100191997 (zma)  LOC100254698 (vvi)  LOC100265063 (vvi)  LOC100779668 (gma)  LOC100780741 (gma)  LOC100819192 (gma)  LOC101245039 (sly)  LOC101248210 (sly)  4CL (sly)  LOC101251197 (sly)  LOC103868556 (bra)  LOC103869195 (bra) 
Subcellular
localization
wolf
E.R. 2,  chlo 1,  cyto 1,  plas 1,  vacu 1,  cyto_plas 1  (predict for NP_001077697.1)
E.R. 3,  plas 2,  E.R._vacu 2,  chlo 1,  nucl 1,  vacu 1,  cyto_plas 1  (predict for NP_175579.1)
plas 2,  E.R. 2,  E.R._plas 2,  chlo 1,  cyto 1,  vacu 1,  nucl_plas 1  (predict for NP_849793.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001077697.1)
other 8  (predict for NP_175579.1)
other 8  (predict for NP_849793.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 14
ath00999 Biosynthesis of secondary metabolites - unclassified 5
ath00941 Flavonoid biosynthesis 4
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
Genes directly connected with 4CL1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
15.0 PAL1 PHE ammonia lyase 1 [detail] 818280
14.4 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [detail] 834951
14.1 CYP98A3 cytochrome P450, family 98, subfamily A, polypeptide 3 [detail] 818686
14.1 4CL2 4-coumarate:CoA ligase 2 [detail] 821678
13.0 CCoAOMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 829551
11.4 AT1G22410 Class-II DAHP synthetase family protein [detail] 838847
11.1 OMT1 O-methyltransferase 1 [detail] 835504
11.0 PAL2 phenylalanine ammonia-lyase 2 [detail] 824493
9.4 PAL4 phenylalanine ammonia-lyase 4 [detail] 820196
8.0 4CL5 4-coumarate:CoA ligase 5 [detail] 821677
5.3 MYB63 myb domain protein 63 [detail] 844259
4.7 FAH1 ferulic acid 5-hydroxylase 1 [detail] 829779
Coexpressed
gene list		 [Coexpressed gene list for 4CL1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256186_at
256186_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256186_at
256186_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256186_at
256186_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841593      
Refseq ID (protein) NP_001077697.1 
NP_175579.1 
NP_849793.1 


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