[←][→] ath   At1g51680 Gene
functional annotation
Function   4-coumarate:CoA ligase 1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009698 [list] [network] phenylpropanoid metabolic process  (113 genes)  TAS  
GO:0009411 [list] [network] response to UV  (126 genes)  IEP  
GO:0009611 [list] [network] response to wounding  (816 genes)  IEP  
GO:0009620 [list] [network] response to fungus  (999 genes)  IEP  
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0016207 [list] [network] 4-coumarate-CoA ligase activity  (13 genes)  IDA  
KEGG ath00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (39 genes)
ath00940 [list] [network] Phenylpropanoid biosynthesis (128 genes)
Protein NP_001077697.1  NP_175579.1  NP_849793.1 
BLAST NP_001077697.1  NP_175579.1  NP_849793.1 
Orthologous [Ortholog page] 4CL3 (gma)  4CL4 (gma)  4CL2 (gma)  4CL1 (gma)  4CL2 (ath)  4CL3 (ath)  LOC4328485 (osa)  LOC4330407 (osa)  LOC4341718 (osa)  LOC4345054 (osa)  LOC4345717 (osa)  LOC7455782 (ppo)  LOC7462820 (ppo)  LOC7469843 (ppo)  LOC7488981 (ppo)  LOC11426040 (mtr)  LOC11429318 (mtr)  LOC18100510 (ppo)  LOC18100511 (ppo)  LOC25488009 (mtr)  LOC25494254 (mtr)  LOC100779668 (gma)  LOC100780741 (gma)  LOC100810418 (gma)  LOC100819192 (gma)  LOC101245039 (sly)  LOC101248210 (sly)  4CL (sly)  LOC101251197 (sly)  LOC101251363 (sly)  LOC103831048 (bra)  LOC103868556 (bra)  LOC103869195 (bra)  LOC123044016 (tae)  LOC123051893 (tae)  LOC123128073 (tae)  LOC123132517 (tae)  LOC123136589 (tae)  LOC123137862 (tae)  LOC123144103 (tae)  LOC123145165 (tae)  LOC123149370 (tae)  LOC123169286 (tae)  LOC123187773 (tae)  LOC123402081 (hvu)  LOC123405563 (hvu)  LOC123409124 (hvu)  LOC123425062 (hvu) 
Subcellular
localization
wolf
E.R. 2,  chlo 1,  cyto 1,  plas 1,  vacu 1,  cyto_plas 1  (predict for NP_001077697.1)
E.R. 3,  plas 2,  E.R._vacu 2,  chlo 1,  nucl 1,  vacu 1,  cyto_plas 1  (predict for NP_175579.1)
plas 2,  E.R. 2,  E.R._plas 2,  chlo 1,  cyto 1,  vacu 1,  nucl_plas 1  (predict for NP_849793.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001077697.1)
other 8  (predict for NP_175579.1)
other 8  (predict for NP_849793.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 13
ath00941 Flavonoid biosynthesis 4
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ath00360 Phenylalanine metabolism 3
Genes directly connected with 4CL1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
17.9 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [detail] 834951
16.1 PAL1 PHE ammonia lyase 1 [detail] 818280
16.1 4CL2 4-coumarate:CoA ligase 2 [detail] 821678
15.6 CYP98A3 cytochrome P450, family 98, subfamily A, polypeptide 3 [detail] 818686
14.3 CCoAOMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 829551
12.7 LysoPL2 lysophospholipase 2 [detail] 841709
12.3 PAL2 phenylalanine ammonia-lyase 2 [detail] 824493
11.6 OMT1 O-methyltransferase 1 [detail] 835504
10.1 PAL4 phenylalanine ammonia-lyase 4 [detail] 820196
8.6 4CL5 4-coumarate:CoA ligase 5 [detail] 821677
8.1 AT1G28680 HXXXD-type acyl-transferase family protein [detail] 839768
6.2 AT5G12300 Calcium-dependent lipid-binding (CaLB domain) family protein [detail] 831105
5.9 MYB63 myb domain protein 63 [detail] 844259
4.8 FAH1 ferulic acid 5-hydroxylase 1 [detail] 829779
Coexpressed
gene list		 [Coexpressed gene list for 4CL1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256186_at
256186_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256186_at
256186_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256186_at
256186_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841593      
Refseq ID (protein) NP_001077697.1 
NP_175579.1 
NP_849793.1 


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