[←][→] ath   At1g52930 Gene
functional annotation
Function   Ribosomal RNA processing Brix domain protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000027 [list] [network] ribosomal large subunit assembly  (4 genes)  IMP  
GO:0006364 [list] [network] rRNA processing  (169 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0019843 [list] [network] rRNA binding  (21 genes)  IEA  
KEGG
Protein NP_564618.1 
BLAST NP_564618.1 
Orthologous [Ortholog page] AT3G15460 (ath)  LOC4329832 (osa)  LOC7460836 (ppo)  LOC11406501 (mtr)  LOC18095612 (ppo)  LOC25481942 (mtr)  LOC100796135 (gma)  LOC100797218 (gma)  LOC100797887 (gma)  LOC101259142 (sly)  LOC103840749 (bra)  LOC103859624 (bra)  LOC103869918 (bra)  LOC123046671 (tae)  LOC123054535 (tae)  LOC123127546 (tae)  LOC123137159 (tae)  LOC123144664 (tae)  LOC123190387 (tae)  LOC123402981 (hvu)  LOC123427864 (hvu) 
Subcellular
localization
wolf
nucl 8,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_564618.1)
Subcellular
localization
TargetP
other 8  (predict for NP_564618.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 9
Genes directly connected with AT1G52930 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
13.3 HDA3 histone deacetylase 3 [detail] 823605
11.8 AT3G18600 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 821391
11.4 AT5G27120 NOP56-like pre RNA processing ribonucleoprotein [detail] 832770
10.5 AT5G15750 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [detail] 831431
10.1 RRP4 ribosomal RNA processing 4 [detail] 839521
8.8 RID3 Transducin/WD40 repeat-like superfamily protein [detail] 824079
8.8 NRP2 NAP1-related protein 2 [detail] 838462
Coexpressed
gene list		 [Coexpressed gene list for AT1G52930]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260157_at
260157_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260157_at
260157_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260157_at
260157_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841726      
Refseq ID (protein) NP_564618.1 


The preparation time of this page was 0.8 [sec].