[][] ath   AT1G52930 Gene
functional annotation
Function   Ribosomal RNA processing Brix domain protein
GO BP
GO:0000027 [list] [network] ribosomal large subunit assembly  (33 genes)  IBA IMP  
GO:0006364 [list] [network] rRNA processing  (276 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG
Protein NP_564618.1 
BLAST NP_564618.1 
Orthologous [Ortholog page] AT3G15460 (ath)LOC4329832 (osa)LOC11406501 (mtr)LOC25481942 (mtr)LOC100216595 (zma)LOC100247988 (vvi)LOC100284070 (zma)LOC100797218 (gma)LOC100797887 (gma)LOC101259142 (sly)LOC103840749 (bra)LOC103859624 (bra)LOC103869918 (bra)
Subcellular
localization
wolf
nucl 8,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_564618.1)
Subcellular
localization
TargetP
other 8  (predict for NP_564618.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 9
ath03010 Ribosome 2
Genes directly connected with AT1G52930 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
13.6 AT5G27120 NOP56-like pre RNA processing ribonucleoprotein [detail] 832770
12.4 HDA3 histone deacetylase 3 [detail] 823605
11.4 ROC2 rotamase cyclophilin 2 [detail] 824773
10.3 AT5G15750 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [detail] 831431
8.8 NRP2 NAP1-related protein 2 [detail] 838462
Coexpressed
gene list
[Coexpressed gene list for AT1G52930]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260157_at
260157_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260157_at
260157_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
260157_at
260157_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 841726    
Refseq ID (protein) NP_564618.1 


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