[←][→] ath   At1g53090 Gene
functional annotation
Function   SPA1-related 4    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009640 [list] [network] photomorphogenesis  (80 genes)  IEA  
GO:0009637 [list] [network] response to blue light  (160 genes)  IMP  
GO:0006468 [list] [network] protein phosphorylation  (639 genes)  IEA  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0005524 [list] [network] ATP binding  (253 genes)  IEA  
GO:0042802 [list] [network] identical protein binding  (404 genes)  IPI  
GO:0004672 [list] [network] protein kinase activity  (768 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001321532.1  NP_001321533.1  NP_001321534.1  NP_175717.1  NP_849802.1 
BLAST NP_001321532.1  NP_001321533.1  NP_001321534.1  NP_175717.1  NP_849802.1 
Orthologous [Ortholog page] SPA3 (ath)  LOC4324727 (osa)  LOC7460821 (ppo)  LOC11411033 (mtr)  LOC18095578 (ppo)  LOC100784064 (gma)  LOC100809718 (gma)  LOC100811457 (gma)  LOC100813635 (gma)  LOC101249991 (sly)  LOC101256107 (sly)  LOC103840863 (bra)  LOC103868459 (bra)  LOC103869936 (bra)  LOC123062017 (tae)  LOC123070723 (tae)  LOC123079128 (tae)  LOC123444323 (hvu) 
Subcellular
localization
wolf
chlo 4,  nucl 4,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_001321532.1)
nucl 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  cyto 1,  cysk 1  (predict for NP_001321533.1)
nucl 6,  plas 1,  golg_plas 1,  chlo 1,  cyto 1,  cysk 1  (predict for NP_001321534.1)
nucl 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  cyto 1,  cysk 1  (predict for NP_175717.1)
nucl 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  cyto 1,  cysk 1  (predict for NP_849802.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_001321532.1)
other 6,  chlo 3  (predict for NP_001321533.1)
other 6,  chlo 3  (predict for NP_001321534.1)
other 6,  chlo 3  (predict for NP_175717.1)
other 6,  chlo 3  (predict for NP_849802.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
ath04712 Circadian rhythm - plant 2
Genes directly connected with SPA4 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.1 SPA3 SPA1-related 3 [detail] 820767
9.2 SPS1 solanesyl diphosphate synthase 1 [detail] 844187
8.0 SPA1 SPA (suppressor of phyA-105) protein family [detail] 819242
7.4 COP1 Transducin/WD40 repeat-like superfamily protein [detail] 817857
6.0 bHLH34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [detail] 821899
5.6 BT3 BTB and TAZ domain protein 3 [detail] 837076
Coexpressed
gene list		 [Coexpressed gene list for SPA4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261319_at
261319_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261319_at
261319_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261319_at
261319_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841743      
Refseq ID (protein) NP_001321532.1 
NP_001321533.1 
NP_001321534.1 
NP_175717.1 
NP_849802.1 


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