[←][→] ath   At1g55000 Gene
functional annotation
Function   peptidoglycan-binding LysM domain-containing protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0016567 [list] [network] protein ubiquitination  (434 genes)  IEA  
GO CC
GO MF
KEGG
Protein NP_001031192.1  NP_001031193.1  NP_564673.1 
BLAST NP_001031192.1  NP_001031193.1  NP_564673.1 
Orthologous [Ortholog page] LOC4333817 (osa)  LOC7473286 (ppo)  LOC11440777 (mtr)  LOC100783874 (gma)  LOC100803417 (gma)  LOC101243744 (sly)  LOC103848274 (bra)  LOC112325595 (ppo)  LOC123087173 (tae)  LOC123090792 (tae)  LOC123095799 (tae)  LOC123428596 (hvu)  LOC123451029 (hvu) 
Subcellular
localization
wolf
chlo 6,  cyto 2,  vacu 1,  cyto_nucl 1  (predict for NP_001031192.1)
chlo 6,  cyto 2,  vacu 1,  cyto_nucl 1  (predict for NP_001031193.1)
chlo 6,  cyto 2,  vacu 1,  cyto_nucl 1  (predict for NP_564673.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001031192.1)
scret 9  (predict for NP_001031193.1)
scret 9  (predict for NP_564673.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with AT1G55000 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.1 LCL1 LHY/CCA1-like 1 [detail] 831766
6.8 VTI1B Vesicle transport v-SNARE family protein [detail] 839208
6.2 APG5 autophagy protein Apg5 family [detail] 831594
6.2 AT2G15695 peptide methionine sulfoxide reductase (Protein of unknown function DUF829, transmembrane 53) [detail] 816063
5.0 NF-YC1 nuclear factor Y, subunit C1 [detail] 824019
Coexpressed
gene list		 [Coexpressed gene list for AT1G55000]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256353_at
256353_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256353_at
256353_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256353_at
256353_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841942      
Refseq ID (protein) NP_001031192.1 
NP_001031193.1 
NP_564673.1 


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