ATTED-II : GeneID search result

[←][→] ath AT1G55350 Gene

functional annotation

Function

calpain-type cysteine protease family

GO BP

GO:0090628 [list] [network] plant epidermal cell fate specification	(1 genes)	IMP
GO:0097264 [list] [network] self proteolysis	(1 genes)	IDA
GO:0090392 [list] [network] sepal giant cell differentiation	(2 genes)	IMP
GO:0040014 [list] [network] regulation of multicellular organism growth	(3 genes)	IMP
GO:0032877 [list] [network] positive regulation of DNA endoreduplication	(5 genes)	IMP
GO:2000014 [list] [network] regulation of endosperm development	(10 genes)	IMP
GO:0009934 [list] [network] regulation of meristem structural organization	(21 genes)	IMP
GO:0001708 [list] [network] cell fate specification	(29 genes)	IMP
GO:0009960 [list] [network] endosperm development	(34 genes)	IMP
GO:0042127 [list] [network] regulation of cell population proliferation	(67 genes)	IMP
GO:2000024 [list] [network] regulation of leaf development	(73 genes)	IMP
GO:0001558 [list] [network] regulation of cell growth	(107 genes)	IMP
GO:0009793 [list] [network] embryo development ending in seed dormancy	(547 genes)	IMP NAS

GO CC

GO:0010008 [list] [network] endosome membrane	(162 genes)	IDA
GO:0005887 [list] [network] integral component of plasma membrane	(171 genes)	IDA
GO:0005789 [list] [network] endoplasmic reticulum membrane	(466 genes)	IDA
GO:0005783 [list] [network] endoplasmic reticulum	(877 genes)	IDA
GO:0005886 [list] [network] plasma membrane	(3771 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	IDA

GO MF

GO:0004197 [list] [network] cysteine-type endopeptidase activity	(66 genes)	IDA
GO:0008234 [list] [network] cysteine-type peptidase activity	(125 genes)	IMP

KEGG

Protein

NP_001185238.1 NP_001319240.1 NP_001321273.1 NP_175932.2 NP_850966.1 NP_850967.1

BLAST

NP_001185238.1 NP_001319240.1 NP_001321273.1 NP_175932.2 NP_850966.1 NP_850967.1

Orthologous

[Ortholog page] LOC542509 (zma) LOC4330484 (osa) LOC11405221 (mtr) LOC100244915 (vvi) LOC100778679 (gma) LOC100809231 (gma) LOC101266917 (sly) LOC103871041 (bra)

Subcellular
localization
wolf

plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_001185238.1)
plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_001319240.1)
plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_001321273.1)
plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_175932.2)
plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_850966.1)
plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_850967.1)

Subcellular
localization
TargetP

other 5, scret 3	(predict for NP_001185238.1)
other 5, scret 3	(predict for NP_001319240.1)
other 5, scret 3	(predict for NP_001321273.1)
other 5, scret 3	(predict for NP_175932.2)
other 5, scret 3	(predict for NP_850966.1)
other 5, scret 3	(predict for NP_850967.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3

Genes directly connected with DEK1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
10.3	UPL1	LOW protein: E3 ubiquitin ligase-like protein	[detail]	842036
10.3	UPL2	ubiquitin-protein ligase 2	[detail]	843368
9.9	RGD3	ROOT GROWTH DEFECTIVE 3	[detail]	824595
7.1	AT5G42620	metalloendopeptidase / zinc ion binding protein	[detail]	834269
7.0	SUVR5	histone-lysine N-methyltransferase SUVR5	[detail]	816905
6.7	PUM2	pumilio 2	[detail]	817468

Coexpressed
gene list

[Coexpressed gene list for DEK1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

259646_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

259646_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

259646_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	841981
Refseq ID (protein)	NP_001185238.1
	NP_001319240.1
	NP_001321273.1
	NP_175932.2
	NP_850966.1
	NP_850967.1

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