[][] ath   AT1G55360 Gene
functional annotation
Function   tRNA-splicing ligase (DUF239)
GO BP
GO CC
GO:0005576 [list] [network] extracellular region  (3363 genes)  ISM  
GO MF
GO:0016874 [list] [network] ligase activity  (232 genes)  IEA  
KEGG
Protein NP_175933.1 
BLAST NP_175933.1 
Orthologous [Ortholog page] AT3G13510 (ath)AT5G56530 (ath)LOC4334507 (osa)LOC4342683 (osa)LOC4343684 (osa)LOC7461352 (ppo)LOC7483235 (ppo)LOC11411399 (mtr)LOC11418598 (mtr)LOC100247715 (vvi)LOC100267227 (vvi)LOC100272482 (zma)LOC100279515 (zma)LOC100285736 (zma)LOC100776799 (gma)LOC100813504 (gma)LOC101253614 (sly)LOC101264758 (sly)LOC103832590 (bra)LOC103845089 (bra)LOC103851819 (bra)LOC103870125 (bra)
Subcellular
localization
wolf
chlo 6,  nucl 1,  extr 1,  cyto 1,  E.R. 1,  cysk_nucl 1,  nucl_plas 1,  cyto_E.R. 1  (predict for NP_175933.1)
Subcellular
localization
TargetP
scret 7,  mito 3  (predict for NP_175933.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
Genes directly connected with AT1G55360 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
7.2 AT3G13510 carboxyl-terminal peptidase, putative (DUF239) [detail] 820553
6.4 AT5G01090 Concanavalin A-like lectin family protein [detail] 831840
6.3 CSLC5 Cellulose-synthase-like C5 [detail] 829286
5.2 AT2G27060 Leucine-rich repeat protein kinase family protein [detail] 817248
4.9 AT3G62110 Pectin lyase-like superfamily protein [detail] 825384
4.4 PP2C52 Protein phosphatase 2C family protein [detail] 827930
Coexpressed
gene list
[Coexpressed gene list for AT1G55360]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257510_at
257510_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257510_at
257510_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
257510_at
257510_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 841982    
Refseq ID (protein) NP_175933.1 


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