[←][→] ath   At1g55880 Gene
functional annotation
Function   Pyridoxal-5'-phosphate-dependent enzyme family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO MF
KEGG ath00270 [list] [network] Cysteine and methionine metabolism (124 genes)
ath00920 [list] [network] Sulfur metabolism (42 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
ath01230 [list] [network] Biosynthesis of amino acids (244 genes)
Protein NP_175984.1  NP_974038.1 
BLAST NP_175984.1  NP_974038.1 
Orthologous [Ortholog page] LOC4332062 (osa)  LOC7485110 (ppo)  LOC11436130 (mtr)  LOC100799081 (gma)  LOC101253301 (sly)  LOC103871013 (bra)  LOC123085269 (tae)  LOC123092962 (tae)  LOC123098234 (tae)  LOC123449306 (hvu) 
Subcellular
localization
wolf
chlo 7,  vacu 2  (predict for NP_175984.1)
chlo 6,  extr 1,  vacu 1  (predict for NP_974038.1)
Subcellular
localization
TargetP
scret 3  (predict for NP_175984.1)
scret 3  (predict for NP_974038.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
Genes directly connected with AT1G55880 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.1 SETH2 UDP-Glycosyltransferase superfamily protein [detail] 823646
7.2 AT3G25150 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [detail] 822106
7.2 TOPP1 type one protein phosphatase 1 [detail] 817489
7.1 AT5G62930 SGNH hydrolase-type esterase superfamily protein [detail] 836413
6.8 SWI3B switch subunit 3 [detail] 817927
5.9 MEE50 ARM repeat superfamily protein [detail] 826583
Coexpressed
gene list		 [Coexpressed gene list for AT1G55880]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260594_at
260594_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260594_at
260594_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260594_at
260594_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842038      
Refseq ID (protein) NP_175984.1 
NP_974038.1 


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