ATTED-II : GeneID search result

[←][→] ath AT1G56650 Gene

functional annotation

Function

production of anthocyanin pigment 1

GO BP

GO:0009745 [list] [network] sucrose mediated signaling	(3 genes)	IMP
GO:0031542 [list] [network] positive regulation of anthocyanin biosynthetic process	(4 genes)	IMP
GO:0019430 [list] [network] removal of superoxide radicals	(11 genes)	IMP
GO:0031540 [list] [network] regulation of anthocyanin biosynthetic process	(17 genes)	IMP
GO:0009718 [list] [network] anthocyanin-containing compound biosynthetic process	(18 genes)	IMP
GO:0046283 [list] [network] anthocyanin-containing compound metabolic process	(24 genes)	IMP
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway	(71 genes)	IMP
GO:0002239 [list] [network] response to oomycetes	(88 genes)	IEP
GO:0009753 [list] [network] response to jasmonic acid	(222 genes)	IEP
GO:0009723 [list] [network] response to ethylene	(297 genes)	IEP
GO:0009733 [list] [network] response to auxin	(407 genes)	IEP
GO:0009651 [list] [network] response to salt stress	(485 genes)	IEP
GO:0030154 [list] [network] cell differentiation	(695 genes)	IBA

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IBA ISM

GO MF

GO:0043565 [list] [network] sequence-specific DNA binding	(796 genes)	IBA
GO:0044212 [list] [network] transcription regulatory region DNA binding	(871 genes)	IBA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	IBA ISS TAS
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

ath04712 [list] [network] Circadian rhythm - plant (36 genes)

Protein

NP_176057.1

BLAST

NP_176057.1

Orthologous

[Ortholog page] ANT1 (sly) MYB113 (ath) MYB114 (ath) MYB90 (ath) LOC7461986 (ppo) LOC7492298 (ppo) LOC11412013 (mtr) LOC11424892 (mtr) LOC11425985 (mtr) LOC11425986 (mtr) LOC11426106 (mtr) LOC11426711 (mtr) LOC11430111 (mtr) LOC11431652 (mtr) LOC11432112 (mtr) LOC11436461 (mtr) LOC25479290 (mtr) LOC25479720 (mtr) LOC25480603 (mtr) LOC25480613 (mtr) LOC25480727 (mtr) LOC100232838 (vvi) LOC100233098 (vvi) MYBA6 (vvi) LOC100248383 (vvi) LOC100249722 (vvi) LOC100249851 (vvi) LOC100250947 (vvi) LOC100261946 (vvi) MYBA7 (vvi) LOC100306270 (gma) LOC100778957 (gma) R (gma) LOC100781091 (gma) LOC100791381 (gma) LOC100792465 (gma) LOC100798101 (gma) MYB58 (gma) LOC100802612 (gma) LOC100809746 (gma) LOC100811754 (gma) LOC100816449 (gma) LOC100853472 (vvi) MYB75 (sly) LOC101250068 (sly) LOC101250648 (sly) PAP1 (bra) MYB3 (bra) MYB1 (bra) LOC104878347 (vvi) LOC109121493 (vvi)

Subcellular
localization
wolf

nucl 9, cyto 1, plas 1, cyto_plas 1

(predict for NP_176057.1)

Subcellular
localization
TargetP

other 8

(predict for NP_176057.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00942	Anthocyanin biosynthesis	2
ath00941	Flavonoid biosynthesis	2

Genes directly connected with PAP1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
10.9	UF3GT	UDP-glucose:flavonoid 3-o-glucosyltransferase	[detail]	835489
10.4	GSTF12	glutathione S-transferase phi 12	[detail]	831586
10.0	AT5MAT	HXXXD-type acyl-transferase family protein	[detail]	822623
6.4	MYB90	myb domain protein 90	[detail]	842957
5.9	CSLG3	cellulose synthase like G3	[detail]	828499
5.4	AT2G40435	transcription factor SCREAM-like protein	[detail]	818637

Coexpressed
gene list

[Coexpressed gene list for PAP1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

245628_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

245628_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

245628_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	842120
Refseq ID (protein)	NP_176057.1

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