[←][→] ath   AT1G57820 Gene
functional annotation
Function   Zinc finger (C3HC4-type RING finger) family protein  
GO BP
GO:0031508 [list] [network] pericentric heterochromatin assembly  (1 genes)  IMP  
GO:0090309 [list] [network] positive regulation of methylation-dependent chromatin silencing  (3 genes)  IMP  
GO:0010424 [list] [network] DNA methylation on cytosine within a CG sequence  (10 genes)  IMP  
GO:0032776 [list] [network] DNA methylation on cytosine  (13 genes)  IMP  
GO:0010216 [list] [network] maintenance of DNA methylation  (20 genes)  IBA  
GO:0006325 [list] [network] chromatin organization  (338 genes)  IPI  
GO:0051301 [list] [network] cell division  (352 genes)  IDA  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IBA IDA IEA  
GO CC
GO:0010369 [list] [network] chromocenter  (10 genes)  IDA  
GO:0005720 [list] [network] nuclear heterochromatin  (12 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0010428 [list] [network] methyl-CpNpG binding  (4 genes)  IDA  
GO:0010429 [list] [network] methyl-CpNpN binding  (4 genes)  IDA  
GO:0010385 [list] [network] double-stranded methylated DNA binding  (8 genes)  IDA  
GO:0008327 [list] [network] methyl-CpG binding  (16 genes)  IDA  
GO:0042393 [list] [network] histone binding  (72 genes)  IPI  
GO:0003682 [list] [network] chromatin binding  (126 genes)  IDA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (204 genes)  IBA  
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (434 genes)  IDA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_001319260.1  NP_176092.2  NP_974045.1 
BLAST NP_001319260.1  NP_176092.2  NP_974045.1 
Orthologous [Ortholog page] VIM3 (ath)  VIM5 (ath)  VIM4 (ath)  VIM2 (ath)  LOC4337533 (osa)  LOC7496528 (ppo)  LOC9266770 (osa)  LOC11416728 (mtr)  LOC11419655 (mtr)  LOC100267660 (vvi)  LOC100384551 (zma)  LOC100501293 (zma)  LOC100781044 (gma)  LOC100786796 (gma)  LOC101264121 (sly)  LOC103632186 (zma)  LOC103831022 (bra) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001319260.1)
nucl 9  (predict for NP_176092.2)
nucl 9  (predict for NP_974045.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for NP_001319260.1)
other 7,  chlo 4  (predict for NP_176092.2)
other 7,  chlo 4  (predict for NP_974045.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with VIM1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.5 AT4G14310 Transducin/WD40 repeat-like superfamily protein [detail] 827072
9.5 HTA11 histone H2A 11 [detail] 824621
9.3 CMT3 chromomethylase 3 [detail] 843313
7.5 VIM3 Zinc finger (C3HC4-type RING finger) family protein [detail] 833951
5.9 AT5G13520 peptidase M1 family protein [detail] 831196
Coexpressed
gene list		 [Coexpressed gene list for VIM1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245828_at
245828_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245828_at
245828_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245828_at
245828_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842157      
Refseq ID (protein) NP_001319260.1 
NP_176092.2 
NP_974045.1 


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