[←][→] ath   At1g57820 Gene
functional annotation
Function   Zinc finger (C3HC4-type RING finger) family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0031508 [list] [network] pericentric heterochromatin formation  (1 genes)  IMP  
GO:0090309 [list] [network] positive regulation of DNA methylation-dependent heterochromatin formation  (3 genes)  IMP  
GO:0010424 [list] [network] DNA methylation on cytosine within a CG sequence  (6 genes)  IMP  
GO:0032776 [list] [network] DNA methylation on cytosine  (18 genes)  IMP  
GO:0006325 [list] [network] chromatin organization  (210 genes)  IPI  
GO:0016567 [list] [network] protein ubiquitination  (434 genes)  IDA ISS  
GO:0051301 [list] [network] cell division  (442 genes)  IDA  
GO CC
GO:0010369 [list] [network] chromocenter  (12 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0010428 [list] [network] methyl-CpNpG binding  (8 genes)  IDA ISS  
GO:0010429 [list] [network] methyl-CpNpN binding  (8 genes)  IDA ISS  
GO:0010385 [list] [network] double-stranded methylated DNA binding  (9 genes)  IDA  
GO:0008327 [list] [network] methyl-CpG binding  (20 genes)  IDA ISS  
GO:0042393 [list] [network] histone binding  (66 genes)  IPI  
GO:0003682 [list] [network] chromatin binding  (105 genes)  IDA  
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (261 genes)  IDA ISS  
KEGG
Protein NP_001319260.1  NP_176092.2  NP_974045.1 
BLAST NP_001319260.1  NP_176092.2  NP_974045.1 
Orthologous [Ortholog page] VIM3 (ath)  VIM5 (ath)  VIM4 (ath)  VIM2 (ath)  LOC4337533 (osa)  LOC7482823 (ppo)  LOC7496528 (ppo)  LOC9266770 (osa)  LOC11416728 (mtr)  LOC11419655 (mtr)  LOC100781044 (gma)  LOC100786796 (gma)  LOC101264121 (sly)  LOC103831022 (bra)  LOC103837884 (bra)  LOC103842200 (bra)  LOC123184351 (tae)  LOC123444806 (hvu) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001319260.1)
nucl 9  (predict for NP_176092.2)
nucl 9  (predict for NP_974045.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for NP_001319260.1)
other 7,  chlo 4  (predict for NP_176092.2)
other 7,  chlo 4  (predict for NP_974045.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00270 Cysteine and methionine metabolism 2
ath03030 DNA replication 2
Genes directly connected with VIM1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.7 AT4G14310 Transducin/WD40 repeat-like superfamily protein [detail] 827072
9.2 MET1 methyltransferase 1 [detail] 834975
9.0 HTA11 histone H2A 11 [detail] 824621
5.7 AT5G13520 peptidase M1 family protein [detail] 831196
4.0 ORTHL ORTHRUS-like protein [detail] 826420
Coexpressed
gene list		 [Coexpressed gene list for VIM1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245828_at
245828_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245828_at
245828_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245828_at
245828_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842157      
Refseq ID (protein) NP_001319260.1 
NP_176092.2 
NP_974045.1 


The preparation time of this page was 0.1 [sec].