ATTED-II : GeneID search result

[←][→] ath At1g58470 Gene

functional annotation

Function

RNA-binding protein 1

Plant GARDEN Plant GARDEN JBrowse

GO BP

GO:0009892 [list] [network] negative regulation of metabolic process

(1067 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(13880 genes)

ISM

GO MF

GO:0003727 [list] [network] single-stranded RNA binding	(55 genes)	IDA
GO:0003729 [list] [network] mRNA binding	(1535 genes)	IPI

KEGG

ath03015 [list] [network] mRNA surveillance pathway (119 genes)

Protein

NP_001320402.1 NP_176143.1

BLAST

NP_001320402.1 NP_176143.1

Orthologous

[Ortholog page] LOC7472638 (ppo) LOC7488853 (ppo) LOC25489991 (mtr) LOC100786665 (gma) LOC100816822 (gma) LOC101254896 (sly) LOC103838609 (bra)

Subcellular
localization
wolf

chlo 4, pero 4, nucl 1, mito 1	(predict for NP_001320402.1)
chlo 4, pero 4, nucl 1, mito 1	(predict for NP_176143.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001320402.1)
other 9	(predict for NP_176143.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3
ath04120	Ubiquitin mediated proteolysis	2

Genes directly connected with RBP1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
7.4	MED32	mediator of RNA polymerase II transcription subunit-like protein	[detail]	837720
6.4	AT1G17790	DNA-binding bromodomain-containing protein	[detail]	838357
6.2	AT5G65180	ENTH/VHS family protein	[detail]	836642
4.2	AT3G02160	Bromodomain transcription factor	[detail]	821295

Coexpressed
gene list

[Coexpressed gene list for RBP1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

245808_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

245808_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

245808_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	842216
Refseq ID (protein)	NP_001320402.1
Refseq ID (protein)	NP_176143.1

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