[←][→] ath   At1g60200 Gene
functional annotation
Function   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome  (11 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (183 genes)  IDA IMP  
GO:0009414 [list] [network] response to water deprivation  (1006 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (1086 genes)  IEP IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001321661.1  NP_001321662.1  NP_001321663.1  NP_176226.3 
BLAST NP_001321661.1  NP_001321662.1  NP_001321663.1  NP_176226.3 
Orthologous [Ortholog page] LOC4345578 (osa)  LOC7459056 (ppo)  LOC11405951 (mtr)  LOC18101545 (ppo)  LOC100803051 (gma)  LOC100809428 (gma)  LOC101253282 (sly)  LOC103829743 (bra)  LOC123154525 (tae)  LOC123162187 (tae)  LOC123170041 (tae)  LOC123412430 (hvu) 
Subcellular
localization
wolf
chlo 9,  nucl 1,  cyto_mito 1  (predict for NP_001321661.1)
chlo 9,  nucl 1,  cyto_mito 1  (predict for NP_001321662.1)
chlo 9,  nucl 1,  cyto_mito 1  (predict for NP_001321663.1)
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_176226.3)
Subcellular
localization
TargetP
mito 5,  chlo 4  (predict for NP_001321661.1)
mito 5,  chlo 4  (predict for NP_001321662.1)
mito 5,  chlo 4  (predict for NP_001321663.1)
chlo 9,  other 4  (predict for NP_176226.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
Genes directly connected with AT1G60200 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.6 AT1G70620 cyclin-like protein [detail] 843399
12.0 AT4G36980 CLK4-associating serine/arginine-rich protein [detail] 829852
10.5 U1-70K U1 small nuclear ribonucleoprotein-70K [detail] 824230
10.5 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor [detail] 829822
10.5 AT5G09880 Splicing factor, CC1-like protein [detail] 830848
10.0 INO80 DNA helicase INO80-like protein [detail] 824897
9.9 AT2G16940 Splicing factor, CC1-like protein [detail] 816197
9.5 AT1G19485 Transducin/WD40 repeat-like superfamily protein [detail] 838534
9.1 AT1G20920 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 838685
8.8 TAF2 TBP-associated factor 2 [detail] 843733
7.7 AT1G76720 eukaryotic translation initiation factor 2 (eIF-2) family protein [detail] 844006
7.4 DCL1 dicer-like 1 [detail] 839574
6.5 AT1G21610 wound-responsive family protein [detail] 838762
Coexpressed
gene list		 [Coexpressed gene list for AT1G60200]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264267_at
264267_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264267_at
264267_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264267_at
264267_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842315      
Refseq ID (protein) NP_001321661.1 
NP_001321662.1 
NP_001321663.1 
NP_176226.3 


The preparation time of this page was 0.2 [sec].