[←][→] ath   At1g60650 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0048026 [list] [network] positive regulation of mRNA splicing, via spliceosome  (2 genes)  IGI  
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (205 genes)  IGI  
GO:0009409 [list] [network] response to cold  (472 genes)  IEP IGI  
GO:0009651 [list] [network] response to salt stress  (607 genes)  IEP  
GO:0009414 [list] [network] response to water deprivation  (1006 genes)  IEP  
GO CC
GO:0016607 [list] [network] nuclear speck  (50 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
GO:0003676 [list] [network] nucleic acid binding  (3100 genes)  IDA  
KEGG
Protein NP_001322374.1  NP_001322375.1  NP_564759.1  NP_849832.1 
BLAST NP_001322374.1  NP_001322375.1  NP_564759.1  NP_849832.1 
Orthologous [Ortholog page] AtRZ-1c (ath)  LOC4333731 (osa)  LOC4342599 (osa)  LOC7468443 (ppo)  LOC7479853 (ppo)  LOC100776333 (gma)  LOC100809519 (gma)  LOC101261205 (sly)  LOC101265498 (sly)  LOC103829974 (bra)  LOC103855562 (bra)  LOC112417082 (mtr)  LOC123044878 (tae)  LOC123052698 (tae)  LOC123087276 (tae)  LOC123090679 (tae)  LOC123095694 (tae)  LOC123188598 (tae)  LOC123426076 (hvu)  LOC123447135 (hvu) 
Subcellular
localization
wolf
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001322374.1)
nucl 8,  cyto 1,  mito 1,  extr 1  (predict for NP_001322375.1)
nucl 9  (predict for NP_564759.1)
nucl 9  (predict for NP_849832.1)
Subcellular
localization
TargetP
other 7,  mito 5  (predict for NP_001322374.1)
mito 6,  other 5  (predict for NP_001322375.1)
other 8  (predict for NP_564759.1)
other 8  (predict for NP_849832.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03015 mRNA surveillance pathway 2
Genes directly connected with AtRZ-1b on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.0 AtRZ-1c RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 830307
7.1 TAF15 TBP-associated factor 15 [detail] 841452
7.1 AT3G47120 RNA recognition motif (RRM)-containing protein [detail] 823865
6.2 AT5G57950 26S proteasome regulatory subunit [detail] 835906
6.1 PME31 pectin methylesterase 31 [detail] 822556
5.1 NUB1 ubiquitin-associated (UBA)/TS-N domain-containing protein [detail] 815729
Coexpressed
gene list		 [Coexpressed gene list for AtRZ-1b]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264921_at
264921_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264921_at
264921_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264921_at
264921_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842359      
Refseq ID (protein) NP_001322374.1 
NP_001322375.1 
NP_564759.1 
NP_849832.1 


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