[←][→] ath   AT1G60650 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein  
GO BP
GO:0048026 [list] [network] positive regulation of mRNA splicing, via spliceosome  (4 genes)  IGI  
GO:0045892 [list] [network] negative regulation of transcription, DNA-templated  (253 genes)  IGI  
GO:0009414 [list] [network] response to water deprivation  (361 genes)  IEP  
GO:0009409 [list] [network] response to cold  (411 genes)  IEP IGI  
GO:0009651 [list] [network] response to salt stress  (485 genes)  IEP  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IDA  
GO:1990904 [list] [network] ribonucleoprotein complex  (690 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4187 genes)  IDA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001322374.1  NP_001322375.1  NP_564759.1  NP_849832.1 
BLAST NP_001322374.1  NP_001322375.1  NP_564759.1  NP_849832.1 
Orthologous [Ortholog page] AtRZ-1c (ath)  LOC4333731 (osa)  LOC4342599 (osa)  LOC7468443 (ppo)  LOC100191289 (zma)  LOC100261508 (vvi)  LOC100282673 (zma)  LOC100285313 (zma)  LOC100381912 (zma)  LOC100776333 (gma)  LOC100809519 (gma)  LOC101261205 (sly)  LOC101265498 (sly)  LOC103829974 (bra)  LOC103855562 (bra)  LOC112417082 (mtr) 
Subcellular
localization
wolf
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001322374.1)
nucl 8,  cyto 1,  mito 1,  extr 1  (predict for NP_001322375.1)
nucl 9  (predict for NP_564759.1)
nucl 9  (predict for NP_849832.1)
Subcellular
localization
TargetP
other 7,  mito 5  (predict for NP_001322374.1)
mito 6,  other 5  (predict for NP_001322375.1)
other 8  (predict for NP_564759.1)
other 8  (predict for NP_849832.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 12
Genes directly connected with AtRZ-1b on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.0 AtRZ-1c RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 830307
6.8 TAF15 TBP-associated factor 15 [detail] 841452
6.8 RS41 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 835279
Coexpressed
gene list		 [Coexpressed gene list for AtRZ-1b]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264921_at
264921_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264921_at
264921_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264921_at
264921_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842359      
Refseq ID (protein) NP_001322374.1 
NP_001322375.1 
NP_564759.1 
NP_849832.1 


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