[←][→] ath   At1g60850 Gene
functional annotation
Function   DNA-directed RNA polymerase family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath03020 [list] [network] RNA polymerase (52 genes)
Protein NP_001320360.1  NP_176282.1  NP_849833.1  NP_974057.1 
BLAST NP_001320360.1  NP_176282.1  NP_849833.1  NP_974057.1 
Orthologous [Ortholog page] RPAC43 (ath)  LOC4332531 (osa)  LOC7485118 (ppo)  LOC11444317 (mtr)  LOC100786622 (gma)  LOC100818494 (gma)  LOC101248458 (sly)  LOC103829922 (bra)  LOC103838484 (bra)  LOC123053408 (tae)  LOC123130481 (tae)  LOC123181834 (tae)  LOC123440058 (hvu) 
Subcellular
localization
wolf
cyto 7,  mito 1,  plas 1,  pero 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for NP_001320360.1)
cyto 7,  mito 1,  plas 1,  pero 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for NP_176282.1)
cyto 7,  mito 1,  plas 1,  pero 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for NP_849833.1)
cyto 5,  cysk 5  (predict for NP_974057.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001320360.1)
other 7  (predict for NP_176282.1)
other 7  (predict for NP_849833.1)
other 7  (predict for NP_974057.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath03020 RNA polymerase 3
ath03018 RNA degradation 2
Genes directly connected with ATRPAC42 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.4 AT1G31660 bystin-like protein [detail] 840053
12.1 WDR55 transducin family protein / WD-40 repeat family protein [detail] 817987
12.0 AT2G18900 Transducin/WD40 repeat-like superfamily protein [detail] 816406
11.4 EMB2762 CCAAT-binding factor [detail] 816230
11.3 AT1G65030 Transducin/WD40 repeat-like superfamily protein [detail] 842811
11.0 AT3G09720 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 820129
10.5 AT1G04945 HIT-type Zinc finger family protein [detail] 5007664
9.9 TIM50 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [detail] 842040
9.7 AT1G60080 3'-5'-exoribonuclease family protein [detail] 842303
9.7 AT5G38890 Nucleic acid-binding, OB-fold-like protein [detail] 833880
9.1 RPC14 RNApolymerase 14 kDa subunit [detail] 817503
8.6 AT4G36680 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 829821
8.5 CYCH;1 cyclin H;1 [detail] 832824
7.8 RPS10 ribosomal protein S10 [detail] 821799
7.1 RPAC43 RNA polymerase I subunit 43 [detail] 842356
6.7 eIF6A Translation initiation factor IF6 [detail] 824728
6.1 PYRB PYRIMIDINE B [detail] 821577
Coexpressed
gene list		 [Coexpressed gene list for ATRPAC42]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259908_at
259908_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259908_at
259908_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259908_at
259908_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842377      
Refseq ID (protein) NP_001320360.1 
NP_176282.1 
NP_849833.1 
NP_974057.1 


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