ATTED-II : GeneID search result

[←][→] ath At1g61660 Gene

functional annotation

Function

basic helix-loop-helix (bHLH) DNA-binding superfamily protein

GO BP

GO:2000214 [list] [network] regulation of proline metabolic process	(5 genes)	IMP
GO:0042631 [list] [network] cellular response to water deprivation	(38 genes)	IEP
GO:0071472 [list] [network] cellular response to salt stress	(41 genes)	IEP
GO:2000377 [list] [network] regulation of reactive oxygen species metabolic process	(63 genes)	IMP
GO:0071215 [list] [network] cellular response to abscisic acid stimulus	(230 genes)	IEP
GO:0045893 [list] [network] positive regulation of DNA-templated transcription	(272 genes)	IDA

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

IDA ISM

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(11 genes)	IDA
GO:0043565 [list] [network] sequence-specific DNA binding	(890 genes)	IDA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1576 genes)	ISS
GO:0005515 [list] [network] protein binding	(5066 genes)	IPI

KEGG

Protein

NP_001185284.1 NP_001185285.1 NP_001322871.1 NP_001322872.1 NP_001322873.1 NP_564782.1 NP_849836.1

BLAST

NP_001185284.1 NP_001185285.1 NP_001322871.1 NP_001322872.1 NP_001322873.1 NP_564782.1 NP_849836.1

Orthologous

[Ortholog page] AT3G20640 (ath) LOC4327040 (osa) LOC4339235 (osa) LOC7470906 (ppo) LOC7497032 (ppo) LOC11407905 (mtr) LOC11428544 (mtr) LOC18095864 (ppo) LOC18097442 (ppo) LOC25502666 (mtr) LOC100778697 (gma) LOC100784084 (gma) LOC100794682 (gma) LOC100796549 (gma) LOC100797286 (gma) LOC100805087 (gma) LOC100813887 (gma) LOC100818424 (gma) LOC101263190 (sly) LOC101263532 (sly) LOC101264865 (sly) LOC101268539 (sly) LOC102669363 (gma) LOC103830854 (bra) LOC103835879 (bra) LOC103838437 (bra) LOC103859871 (bra) LOC103869298 (bra) LOC106795829 (gma) LOC123058664 (tae) LOC123065780 (tae) LOC123074858 (tae) LOC123095450 (tae) LOC123167348 (tae) LOC123182517 (tae) LOC123413207 (hvu) LOC123440342 (hvu)

Subcellular
localization
wolf

nucl 10	(predict for NP_001185284.1)
nucl 10	(predict for NP_001185285.1)
nucl 10	(predict for NP_001322871.1)
nucl 10	(predict for NP_001322872.1)
nucl 10	(predict for NP_001322873.1)
nucl 10	(predict for NP_564782.1)
nucl 10	(predict for NP_849836.1)

Subcellular
localization
TargetP

chlo 5, other 4	(predict for NP_001185284.1)
chlo 5, other 4	(predict for NP_001185285.1)
chlo 5, other 4	(predict for NP_001322871.1)
chlo 5, other 4	(predict for NP_001322872.1)
chlo 5, other 4	(predict for NP_001322873.1)
chlo 5, other 4	(predict for NP_564782.1)
chlo 5, other 4	(predict for NP_849836.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT1G61660 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
6.7	AT4G24060	Dof-type zinc finger DNA-binding family protein	[detail]	828506
6.2	AT3G20640	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[detail]	821611
5.4	AT3G47510	uncharacterized protein	[detail]	823905
5.3	CYP711A1	cytochrome P450, family 711, subfamily A, polypeptide 1	[detail]	817157
4.1	XND1	xylem NAC domain 1	[detail]	836574
4.0	LOG1	Putative lysine decarboxylase family protein	[detail]	817376

Coexpressed
gene list

[Coexpressed gene list for AT1G61660]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

265034_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

265034_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

265034_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	842462
Refseq ID (protein)	NP_001185284.1
	NP_001185285.1
	NP_001322871.1
	NP_001322872.1
	NP_001322873.1
	NP_564782.1
	NP_849836.1

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