[←][→] ath   At1g64230 Gene
functional annotation
Function   ubiquitin-conjugating enzyme 28    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (230 genes)  IDA  
GO CC
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (261 genes)  IDA  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (155 genes)
ath04141 [list] [network] Protein processing in endoplasmic reticulum (215 genes)
Protein NP_001031228.1  NP_001154445.1  NP_001154446.1  NP_001185308.1  NP_564828.1 
BLAST NP_001031228.1  NP_001154445.1  NP_001154446.1  NP_001185308.1  NP_564828.1 
Orthologous [Ortholog page] LOC543171 (tae)  LOC547652 (gma)  LOC780682 (tae)  UBC29 (ath)  UBC11 (ath)  UBC12 (ath)  UBC9 (ath)  UBC8 (ath)  UBC10 (ath)  UBC30 (ath)  LOC4327162 (osa)  LOC4327450 (osa)  LOC4327451 (osa)  LOC4328114 (osa)  LOC4328940 (osa)  LOC4330556 (osa)  LOC4337331 (osa)  LOC4341133 (osa)  LOC4346639 (osa)  LOC7467425 (ppo)  LOC7470402 (ppo)  LOC7472487 (ppo)  LOC7479274 (ppo)  LOC7484638 (ppo)  LOC7489805 (ppo)  LOC7494655 (ppo)  LOC7497821 (ppo)  LOC11420397 (mtr)  LOC11432845 (mtr)  LOC11436401 (mtr)  LOC11437634 (mtr)  LOC11443623 (mtr)  LOC18103563 (ppo)  LOC18105670 (ppo)  LOC25501549 (mtr)  UBC3 (sly)  UBC (sly)  LOC100305945 (gma)  LOC100499741 (gma)  LOC100499824 (gma)  LOC100499891 (gma)  LOC100500665 (gma)  LOC100527105 (gma)  LOC100777678 (gma)  LOC100783492 (gma)  LOC100787053 (gma)  LOC100788548 (gma)  LOC100789422 (gma)  LOC100790317 (gma)  LOC100802703 (gma)  LOC100805577 (gma)  LOC100806349 (gma)  LOC100809895 (gma)  LOC100817810 (gma)  LOC100818920 (gma)  UBC11 (sly)  LOC101249087 (sly)  LOC101250739 (sly)  LOC101252287 (sly)  LOC101254567 (sly)  LOC101257090 (sly)  LOC101260872 (sly)  LOC101264951 (sly)  LOC101265051 (sly)  LOC101265499 (sly)  LOC103834781 (bra)  LOC103838144 (bra)  LOC103838220 (bra)  LOC103844808 (bra)  LOC103845050 (bra)  LOC103846025 (bra)  LOC103848719 (bra)  LOC103852040 (bra)  LOC103856951 (bra)  LOC103857087 (bra)  LOC103859333 (bra)  LOC103860482 (bra)  LOC103867752 (bra)  LOC103870601 (bra)  LOC123061638 (tae)  LOC123070256 (tae)  LOC123078708 (tae)  LOC123079569 (tae)  LOC123103437 (tae)  LOC123116053 (tae)  LOC123124682 (tae)  LOC123130205 (tae)  LOC123135884 (tae)  LOC123137059 (tae)  LOC123143404 (tae)  LOC123147877 (tae)  LOC123163058 (tae)  LOC123169481 (tae)  LOC123182373 (tae)  LOC123190930 (tae)  LOC123398194 (hvu)  LOC123402149 (hvu)  LOC123407329 (hvu)  LOC123428296 (hvu)  LOC123444007 (hvu)  LOC123444640 (hvu)  LOC123444715 (hvu) 
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_001031228.1)
nucl 6,  cyto_nucl 4,  chlo 1,  cyto 1,  chlo_mito 1  (predict for NP_001154445.1)
chlo 6,  mito 2,  cyto_mito 1,  nucl 1  (predict for NP_001154446.1)
chlo 6,  mito 2,  cyto_mito 1,  nucl 1  (predict for NP_001185308.1)
nucl 6,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_564828.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001031228.1)
other 9  (predict for NP_001154445.1)
other 6  (predict for NP_001154446.1)
other 6  (predict for NP_001185308.1)
other 8  (predict for NP_564828.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
Genes directly connected with UBC28 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
11.1 AT1G51200 A20/AN1-like zinc finger family protein [detail] 841543
10.8 UBC8 ubiquitin conjugating enzyme 8 [detail] 834173
10.7 ARFA1E ADP-ribosylation factor A1E [detail] 825402
9.5 VAMP711 vesicle-associated membrane protein 711 [detail] 829347
9.3 VTI1B Vesicle transport v-SNARE family protein [detail] 839208
8.4 AT3G01520 Adenine nucleotide alpha hydrolases-like superfamily protein [detail] 821122
7.7 TLP2 tubby like protein 2 [detail] 816344
7.1 AT5G01350 UvrABC system C protein [detail] 830568
7.1 EMB1303 embryo defective 1303 [detail] 842073
6.7 AT5G09225 uncharacterized protein [detail] 2745982
6.1 SPP1 Phosphatidic acid phosphatase (PAP2) family protein [detail] 825018
6.1 AT5G18200 putative galactose-1-phosphate uridyltransferase [detail] 831938
5.9 AT1G10865 cytochrome C oxidase assembly factor [detail] 5007681
5.6 AT4G38495 chromatin-remodeling complex subunit [detail] 830006
5.2 AT3G14595 Ribosomal protein L18ae family [detail] 820686
Coexpressed
gene list		 [Coexpressed gene list for UBC28]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262341_at
262341_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262341_at
262341_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262341_at
262341_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842728      
Refseq ID (protein) NP_001031228.1 
NP_001154445.1 
NP_001154446.1 
NP_001185308.1 
NP_564828.1 


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