ATTED-II : GeneID search result

[←][→] ath At1g69640 Gene

functional annotation

Function

sphingoid base hydroxylase 1

GO BP

GO:0046520 [list] [network] sphingoid biosynthetic process	(3 genes)	IMP
GO:0009640 [list] [network] photomorphogenesis	(80 genes)	IMP

GO CC

GO:0005783 [list] [network] endoplasmic reticulum	(856 genes)	IDA
GO:0005794 [list] [network] Golgi apparatus	(1182 genes)	IDA

GO MF

GO:0000170 [list] [network] sphingosine hydroxylase activity

(2 genes)

IGI

KEGG

ath00600 [list] [network] Sphingolipid metabolism (32 genes)

Protein

NP_177122.2

BLAST

NP_177122.2

Orthologous

[Ortholog page] SBH2 (ath) LOC4330718 (osa) LOC4340921 (osa) LOC9268279 (osa) LOC11420110 (mtr) LOC100778076 (gma) LOC100796655 (gma) LOC101248229 (sly) LOC101265235 (sly) LOC103831367 (bra) LOC103852599 (bra) LOC103872122 (bra) LOC123082947 (tae) LOC123082952 (tae) LOC123128378 (tae) LOC123145493 (tae) LOC123150885 (tae) LOC123154624 (tae) LOC123160354 (tae) LOC123164209 (tae) LOC123403090 (hvu) LOC123410636 (hvu)

Subcellular
localization
wolf

E.R. 4, cyto 2, plas 2, E.R._vacu 2, cyto_plas 2

(predict for NP_177122.2)

Subcellular
localization
TargetP

scret 8

(predict for NP_177122.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with SBH1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
6.3	APRL5	APR-like 5	[detail]	821101
6.2	AT5G35460	uncharacterized protein	[detail]	833509
5.9	AT2G46170	Reticulon family protein	[detail]	819224
5.4	PP2-A15	phloem protein 2-A15	[detail]	824466
4.9	AT1G63010	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein	[detail]	842604
4.5	AT3G57062	uncharacterized protein	[detail]	6240237

Coexpressed
gene list

[Coexpressed gene list for SBH1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

260421_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

260421_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

260421_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	843300
Refseq ID (protein)	NP_177122.2

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