ATTED-II : GeneID search result

[←][→] ath AT1G76120 Gene

functional annotation

Function

Pseudouridine synthase family protein

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

ISM

GO MF

GO:0009982 [list] [network] pseudouridine synthase activity	(20 genes)	TAS
GO:0003723 [list] [network] RNA binding	(1790 genes)	IEA

KEGG

Protein

NP_565126.1 NP_974152.1

BLAST

NP_565126.1 NP_974152.1

Orthologous

[Ortholog page] AT1G20370 (ath) LOC4330262 (osa) LOC11440088 (mtr) LOC11442694 (mtr) LOC100267766 (vvi) LOC100283773 (zma) LOC100778978 (gma) LOC101250299 (sly) LOC103832059 (bra) LOC103872832 (bra)

Subcellular
localization
wolf

cyto 4, cysk 3, cyto_nucl 3, nucl 3	(predict for NP_565126.1)
cyto 6, nucl 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3	(predict for NP_974152.1)

Subcellular
localization
TargetP

other 9	(predict for NP_565126.1)
other 9	(predict for NP_974152.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT1G76120 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
7.9	AT3G26850	histone-lysine N-methyltransferase	[detail]	822300
7.3	AT4G02820	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	828169
7.3	AT5G64320	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	836553
5.5	AT4G01880	methyltransferase	[detail]	828223

Coexpressed
gene list

[Coexpressed gene list for AT1G76120]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

261750_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

261750_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

261750_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	843944
Refseq ID (protein)	NP_565126.1
Refseq ID (protein)	NP_974152.1

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