[←][→] ath   At1g77000 Gene
functional annotation
Function   RNI-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1901332 [list] [network] negative regulation of lateral root development  (7 genes)  IMP  
GO:0010286 [list] [network] heat acclimation  (71 genes)  IEP  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (230 genes)  TAS  
GO:0051603 [list] [network] proteolysis involved in protein catabolic process  (247 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (155 genes)
Protein NP_001185415.1  NP_001322101.1  NP_001322102.1  NP_565147.1 
BLAST NP_001185415.1  NP_001322101.1  NP_001322102.1  NP_565147.1 
Orthologous [Ortholog page] SKP2A (ath)  LOC4324993 (osa)  LOC4338850 (osa)  LOC7466433 (ppo)  LOC7469194 (ppo)  LOC25482432 (mtr)  LOC25489745 (mtr)  LOC100788845 (gma)  LOC100793275 (gma)  LOC100797840 (gma)  LOC100818928 (gma)  LOC101254991 (sly)  LOC103830576 (bra)  LOC103832158 (bra)  LOC103835748 (bra)  LOC121173056 (gma)  LOC123056689 (tae)  LOC123062952 (tae)  LOC123071814 (tae)  LOC123080143 (tae)  LOC123133972 (tae)  LOC123182089 (tae)  LOC123443034 (hvu)  LOC123445130 (hvu) 
Subcellular
localization
wolf
nucl 5,  cyto 2,  chlo 1,  pero 1  (predict for NP_001185415.1)
cyto 4,  chlo 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001322101.1)
cyto 4,  chlo 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001322102.1)
nucl 5,  cyto 2,  chlo 1,  pero 1  (predict for NP_565147.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001185415.1)
other 9  (predict for NP_001322101.1)
other 9  (predict for NP_001322102.1)
other 9  (predict for NP_565147.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 2
ath04075 Plant hormone signal transduction 2
Genes directly connected with SKP2B on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.4 AT1G68820 Transmembrane Fragile-X-F-associated protein [detail] 843214
5.2 AT1G13990 plant/protein [detail] 837959
4.9 SNRK2.3 sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 [detail] 836822
Coexpressed
gene list		 [Coexpressed gene list for SKP2B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264957_at
264957_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264957_at
264957_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264957_at
264957_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 844036      
Refseq ID (protein) NP_001185415.1 
NP_001322101.1 
NP_001322102.1 
NP_565147.1 


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