[][] ath   AT1G78420 Gene
functional annotation
Function   RING/U-box superfamily protein
GO BP
GO:0046620 [list] [network] regulation of organ growth  (14 genes)  IMP  
GO:0080113 [list] [network] regulation of seed growth  (14 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IDA IEA  
GO:0007275 [list] [network] multicellular organism development  (2714 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (204 genes)  IDA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001185425.1  NP_565180.1 
BLAST NP_001185425.1  NP_565180.1 
Orthologous [Ortholog page] AT1G17145 (ath)LOC4328856 (osa)LOC4340173 (osa)LOC7471890 (ppo)LOC25487074 (mtr)LOC100256555 (vvi)LOC100275385 (zma)LOC100276421 (zma)LOC100277474 (zma)LOC100502486 (zma)LOC100816142 (gma)LOC100817758 (gma)LOC101267326 (sly)LOC103832322 (bra)LOC103853127 (bra)LOC103872500 (bra)
Subcellular
localization
wolf
nucl 8,  mito 1  (predict for NP_001185425.1)
nucl 8,  mito 1  (predict for NP_565180.1)
Subcellular
localization
TargetP
other 8,  mito 5  (predict for NP_001185425.1)
other 8,  mito 5  (predict for NP_565180.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT1G78420 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
6.0 AT2G02370 SNARE associated Golgi protein family [detail] 814768
5.9 AT4G25690 stress response NST1-like protein [detail] 828674
5.6 AT1G50570 Calcium-dependent lipid-binding (CaLB domain) family protein [detail] 841478
5.4 MYB3R-3 myb domain protein 3r-3 [detail] 820094
5.3 AT5G63640 ENTH/VHS/GAT family protein [detail] 836484
Coexpressed
gene list
[Coexpressed gene list for AT1G78420]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260747_at
260747_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260747_at
260747_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
260747_at
260747_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 844178    
Refseq ID (protein) NP_001185425.1 
NP_565180.1 


The preparation time of this page was 0.2 [sec].