[←][→] ath   At1g79880 Gene
functional annotation
Function   RNA recognition motif (RRM)-containing protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0034470 [list] [network] ncRNA processing  (276 genes)  ISS  
GO CC
GO:0005654 [list] [network] nucleoplasm  (253 genes)  ISS  
GO:0005730 [list] [network] nucleolus  (387 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1729 genes)  ISS  
KEGG
Protein NP_001319421.1  NP_178106.2  NP_974185.1 
BLAST NP_001319421.1  NP_178106.2  NP_974185.1 
Orthologous [Ortholog page] La1 (ath)  LOC4329949 (osa)  LOC4336287 (osa)  LOC7462941 (ppo)  LOC7495710 (ppo)  LOC25482256 (mtr)  LOC100786016 (gma)  LOC100787642 (gma)  LOC100803099 (gma)  LOC101259467 (sly)  LOC103830406 (bra)  LOC103833293 (bra)  LOC103834519 (bra)  LOC103850538 (bra)  LOC123045906 (tae)  LOC123053775 (tae)  LOC123189647 (tae)  LOC123427127 (hvu) 
Subcellular
localization
wolf
nucl 4,  cyto 3,  chlo 2,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001319421.1)
nucl 6,  chlo 1,  cyto 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_178106.2)
nucl 4,  cyto 3,  chlo 2,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_974185.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001319421.1)
other 8  (predict for NP_178106.2)
other 8  (predict for NP_974185.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with La2 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.0 AT4G28830 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 829004
6.8 AT2G26470 embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein [detail] 817188
6.5 AT3G58220 TRAF-like family protein [detail] 824991
6.3 AT4G14145 cytochrome C oxidase assembly protein [detail] 827053
6.2 AT5G43822 Pentatricopeptide repeat (PPR) superfamily protein [detail] 7922354
6.2 AT1G10610 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [detail] 837604
6.2 AT5G06180 fission ELM1-like protein (DUF1022) [detail] 830505
6.2 AT1G08125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 2745748
6.0 DFB DHFS-FPGS homolog B [detail] 830484
5.9 AT4G14720 TIFY domain/Divergent CCT motif family protein [detail] 827125
5.9 AT4G31010 RNA-binding CRS1 / YhbY (CRM) domain-containing protein [detail] 829228
5.5 NAC014 NAC 014 [detail] 840202
4.8 AT3G19515 apoptosis inhibitor [detail] 821486
4.8 AT1G24265 bZIP transcription factor, putative (DUF1664) [detail] 839041
Coexpressed
gene list		 [Coexpressed gene list for La2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260160_at
260160_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260160_at
260160_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260160_at
260160_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 844327      
Refseq ID (protein) NP_001319421.1 
NP_178106.2 
NP_974185.1 


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