[←][→] ath   At1g80420 Gene
functional annotation
Function   BRCT domain-containing DNA repair protein      
GO BP
GO:0006266 [list] [network] DNA ligation  (1 genes)  IMP  
GO:1901969 [list] [network] positive regulation of polynucleotide 3'-phosphatase activity  (1 genes)  IDA  
GO:1901972 [list] [network] positive regulation of DNA-5-methylcytosine glycosylase activity  (1 genes)  IDA  
GO:0000012 [list] [network] single strand break repair  (2 genes)  IEA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (9 genes)  IMP  
GO:0006284 [list] [network] base-excision repair  (16 genes)  IEA  
GO:0080111 [list] [network] DNA demethylation  (19 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (9 genes)  IEA  
GO:0010385 [list] [network] double-stranded methylated DNA binding  (9 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03410 [list] [network] Base excision repair (41 genes)
Protein NP_001077856.1  NP_001185449.1  NP_001321272.1  NP_178158.2  NP_850985.1 
BLAST NP_001077856.1  NP_001185449.1  NP_001321272.1  NP_178158.2  NP_850985.1 
Orthologous [Ortholog page] LOC4340098 (osa)  LOC7490987 (ppo)  LOC11442049 (mtr)  LOC100780160 (gma)  LOC100818448 (gma)  LOC101246064 (sly)  LOC103853256 (bra)  LOC123087989 (tae)  LOC123151422 (tae)  LOC123166924 (tae)  LOC123170760 (tae)  LOC123409672 (hvu) 
Subcellular
localization
wolf
nucl 8,  cyto 1,  cysk 1,  golg_plas 1  (predict for NP_001077856.1)
nucl 8,  cyto 1,  cysk 1,  golg_plas 1  (predict for NP_001185449.1)
nucl 8,  cyto 1,  cysk 1,  golg_plas 1  (predict for NP_001321272.1)
nucl 8,  cyto 1,  cysk 1,  golg_plas 1  (predict for NP_178158.2)
nucl 8,  cyto 1,  cysk 1,  golg_plas 1  (predict for NP_850985.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001077856.1)
chlo 6  (predict for NP_001185449.1)
chlo 6  (predict for NP_001321272.1)
chlo 6  (predict for NP_178158.2)
chlo 6  (predict for NP_850985.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with ATXRCC1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.6 AtCaN2 Ca(2+)-dependent nuclease family protein [detail] 818634
5.2 AT5G25265 Hyp O-arabinosyltransferase-like protein [detail] 832598
5.1 GRF11 general regulatory factor 11 [detail] 840380
Coexpressed
gene list		 [Coexpressed gene list for ATXRCC1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260279_at
260279_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260279_at
260279_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260279_at
260279_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 844382      
Refseq ID (protein) NP_001077856.1 
NP_001185449.1 
NP_001321272.1 
NP_178158.2 
NP_850985.1 


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