ATTED-II : GeneID search result

[←][→] ath AT2G01940 Gene

functional annotation

Function

C2H2-like zinc finger protein

GO BP

GO:0009590 [list] [network] detection of gravity	(3 genes)	IMP
GO:0010601 [list] [network] positive regulation of auxin biosynthetic process	(5 genes)	IGI
GO:0010031 [list] [network] circumnutation	(7 genes)	IMP
GO:2000904 [list] [network] regulation of starch metabolic process	(17 genes)	IMP
GO:0009959 [list] [network] negative gravitropism	(18 genes)	IMP
GO:2000012 [list] [network] regulation of auxin polar transport	(24 genes)	IGI
GO:0009958 [list] [network] positive gravitropism	(36 genes)	IMP
GO:0048444 [list] [network] floral organ morphogenesis	(44 genes)	IGI
GO:0009630 [list] [network] gravitropism	(90 genes)	IBA IGI
GO:0009965 [list] [network] leaf morphogenesis	(96 genes)	IGI
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(1984 genes)	TAS

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IBA IDA ISM

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity

(1599 genes)

ISS

KEGG

Protein

NP_001030949.2 NP_001077868.1 NP_178303.2

BLAST

NP_001030949.2 NP_001077868.1 NP_178303.2

Orthologous

[Ortholog page] IDD16 (ath) IDD14 (ath) LOC4345790 (osa) LOC4347215 (osa) LOC7454015 (ppo) LOC7471448 (ppo) LOC9270511 (osa) LOC100260988 (vvi) LOC100262958 (vvi) LOC100276127 (zma) LOC100785333 (gma) LOC100791007 (gma) LOC100795754 (gma) LOC100798167 (gma) LOC100800187 (gma) LOC100806138 (gma) LOC101245262 (sly) LOC101250383 (sly) LOC101262550 (sly) LOC101268284 (sly) LOC103633308 (zma) LOC103643131 (zma) LOC103827538 (bra) LOC103830985 (bra) LOC103831230 (bra) LOC103835441 (bra) LOC103839462 (bra) LOC103840548 (bra) LOC103854029 (bra)

Subcellular
localization
wolf

nucl 6, mito 2, plas 1, extr 1	(predict for NP_001030949.2)
nucl 9	(predict for NP_001077868.1)
nucl 10	(predict for NP_178303.2)

Subcellular
localization
TargetP

mito 7, other 5	(predict for NP_001030949.2)
chlo 8	(predict for NP_001077868.1)
chlo 8	(predict for NP_178303.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

Genes directly connected with SGR5 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
7.3	IDD14	indeterminate(ID)-domain 14	[detail]	843141
7.1	AT3G48550	SHOOT GRAVITROPISM-like protein	[detail]	824014
5.7	PRA1.F1	prenylated RAB acceptor 1.F1	[detail]	838346
5.4	ADF9	actin depolymerizing factor 9	[detail]	829649
5.3	ATHB13	Homeobox-leucine zipper protein family	[detail]	843314
4.1	RLP27	receptor like protein 27	[detail]	817868

Coexpressed
gene list

[Coexpressed gene list for SGR5]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

265249_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

265249_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

265249_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	814725
Refseq ID (protein)	NP_001030949.2
	NP_001077868.1
	NP_178303.2

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