[←][→] ath   AT2G03870 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein  
GO BP
GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process  (71 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (7 genes)  IBA  
GO:0005688 [list] [network] U6 snRNP  (11 genes)  IBA  
GO:0005689 [list] [network] U12-type spliceosomal complex  (18 genes)  IBA  
GO:0071004 [list] [network] U2-type prespliceosome  (24 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_178480.1  NP_849931.1 
BLAST NP_178480.1  NP_849931.1 
Orthologous [Ortholog page] LOC4344803 (osa)  LOC11407370 (mtr)  LOC25501029 (mtr)  LOC100285982 (zma)  LOC100306498 (gma)  LOC100789536 (gma)  LOC100807381 (gma)  LOC100855332 (vvi)  LOC101258986 (sly)  LOC103853921 (bra)  LOC103875380 (bra) 
Subcellular
localization
wolf
chlo 3,  nucl 1,  cyto 1,  mito 1,  extr 1,  cysk_nucl 1  (predict for NP_178480.1)
chlo 3,  nucl 1,  cyto 1,  mito 1,  extr 1,  cysk_nucl 1  (predict for NP_849931.1)
Subcellular
localization
TargetP
other 8  (predict for NP_178480.1)
other 8  (predict for NP_849931.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03018 RNA degradation 3
Genes directly connected with EMB2816 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.7 LSM2 Small nuclear ribonucleoprotein family protein [detail] 839526
6.8 AT5G44710 37S ribosomal protein S27 [detail] 834500
6.4 AT4G32930 hypothetical protein [detail] 829430
6.2 AT5G58990 28S ribosomal S34 protein [detail] 836016
6.2 ER enhancer of rudimentary protein [detail] 830948
5.5 APG12B Ubiquitin-like superfamily protein [detail] 820611
5.3 AT2G04845 Acyl-CoA N-acyltransferases (NAT) superfamily protein [detail] 815030
Coexpressed
gene list		 [Coexpressed gene list for EMB2816]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
263332_at
263332_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
263332_at
263332_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
263332_at
263332_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 814913      
Refseq ID (protein) NP_178480.1 
NP_849931.1 


The preparation time of this page was 0.2 [sec].