| functional annotation |
| Function |
phytochrome B |
|
| GO BP |
|
GO:0017012 [list] [network] protein-phytochromobilin linkage
|
(1 genes)
|
IDA
|
 |
|
GO:0010202 [list] [network] response to low fluence red light stimulus
|
(2 genes)
|
IMP
|
|
|
GO:0010617 [list] [network] circadian regulation of calcium ion oscillation
|
(3 genes)
|
IMP
|
|
|
GO:0009584 [list] [network] detection of visible light
|
(5 genes)
|
IEA
|
|
|
GO:0010148 [list] [network] transpiration
|
(5 genes)
|
IMP
|
|
|
GO:0010244 [list] [network] response to low fluence blue light stimulus by blue low-fluence system
|
(9 genes)
|
IDA
|
|
|
GO:0010161 [list] [network] red light signaling pathway
|
(10 genes)
|
IMP
|
|
|
GO:0009649 [list] [network] entrainment of circadian clock
|
(15 genes)
|
IMP
|
|
|
GO:0009638 [list] [network] phototropism
|
(24 genes)
|
IMP
|
|
|
GO:0009687 [list] [network] abscisic acid metabolic process
|
(24 genes)
|
IMP
|
|
|
GO:0018298 [list] [network] protein-chromophore linkage
|
(38 genes)
|
IEA
|
|
|
GO:0009585 [list] [network] red, far-red light phototransduction
|
(54 genes)
|
IEA
|
|
|
GO:0010218 [list] [network] response to far red light
|
(54 genes)
|
IMP
|
|
|
GO:0010374 [list] [network] stomatal complex development
|
(54 genes)
|
IMP
|
|
|
GO:2000028 [list] [network] regulation of photoperiodism, flowering
|
(63 genes)
|
IMP
|
|
|
GO:0009640 [list] [network] photomorphogenesis
|
(71 genes)
|
IMP
|
|
|
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway
|
(71 genes)
|
IMP
|
|
|
GO:0010029 [list] [network] regulation of seed germination
|
(84 genes)
|
IMP
|
|
|
GO:0009630 [list] [network] gravitropism
|
(90 genes)
|
IMP
|
|
|
GO:0015979 [list] [network] photosynthesis
|
(206 genes)
|
IMP
|
|
|
GO:0045892 [list] [network] negative regulation of transcription, DNA-templated
|
(253 genes)
|
IDA
|
|
|
GO:0031347 [list] [network] regulation of defense response
|
(260 genes)
|
IMP
|
|
|
GO:0006325 [list] [network] chromatin organization
|
(338 genes)
|
IMP
|
|
|
GO:0009409 [list] [network] response to cold
|
(411 genes)
|
IMP
|
|
|
GO:0009266 [list] [network] response to temperature stimulus
|
(608 genes)
|
IMP
|
|
|
| GO CC |
|
| GO MF |
|
GO:0031517 [list] [network] red light photoreceptor activity
|
(1 genes)
|
IDA
|
|
|
GO:0031516 [list] [network] far-red light photoreceptor activity
|
(2 genes)
|
IDA
|
|
|
GO:0009883 [list] [network] red or far-red light photoreceptor activity
|
(3 genes)
|
IMP
|
|
|
GO:1990841 [list] [network] promoter-specific chromatin binding
|
(4 genes)
|
IDA
|
|
|
GO:0000155 [list] [network] phosphorelay sensor kinase activity
|
(16 genes)
|
IEA
|
|
|
GO:0004673 [list] [network] protein histidine kinase activity
|
(17 genes)
|
ISS
|
|
|
GO:0042803 [list] [network] protein homodimerization activity
|
(158 genes)
|
IDA
|
|
|
GO:0042802 [list] [network] identical protein binding
|
(288 genes)
|
IPI
|
|
|
GO:0043565 [list] [network] sequence-specific DNA binding
|
(796 genes)
|
IDA
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
ath04712 [list] [network] Circadian rhythm - plant (36 genes) |
 |
| Protein |
NP_001325249.1
NP_179469.1
|
| BLAST |
NP_001325249.1
NP_179469.1
|
| Orthologous |
[Ortholog page]
PHYD (ath)
PHYE (ath)
LOC4332623 (osa)
LOC7485825 (ppo)
LOC7485902 (ppo)
LOC11417317 (mtr)
LOC11420025 (mtr)
LOC100261882 (vvi)
PHYE (vvi)
LOC100381811 (zma)
LOC100383702 (zma)
PHYB (gma)
PHYE2 (gma)
PHYE1 (gma)
PHYE (sly)
PHYB1 (sly)
PHYB2 (sly)
LOC103856075 (bra)
LOC103869720 (bra)
|
Subcellular
localization
wolf |
|
nucl 3,
plas 2,
vacu 1,
cysk_plas 1,
E.R._plas 1,
cyto_plas 1
|
(predict for NP_001325249.1)
|
|
nucl 5,
plas 2,
chlo 1,
cyto_plas 1
|
(predict for NP_179469.1)
|
|
Subcellular
localization
TargetP |
|
chlo 6,
other 6
|
(predict for NP_001325249.1)
|
|
chlo 6,
other 6
|
(predict for NP_179469.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
Genes directly connected with PHYB on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 6.0 |
BIM1 |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
[detail] |
830708 |
| 5.3 |
PIL1 |
phytochrome interacting factor 3-like 1 |
[detail] |
819311 |
| 4.6 |
BIM2 |
BES1-interacting Myc-like protein 2 |
[detail] |
843233 |
|
Coexpressed
gene list |
[Coexpressed gene list for PHYB]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
266065_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
266065_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
266065_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT2G18790 Gene
