[][] ath   AT2G27040 Gene
functional annotation
Function   Argonaute family protein
GO BP
GO:0010495 [list] [network] long-distance posttranscriptional gene silencing  (3 genes)  IMP  
GO:0019048 [list] [network] modulation by virus of host morphology or physiology  (5 genes)  IMP  
GO:0051567 [list] [network] histone H3-K9 methylation  (7 genes)  IMP  
GO:0031048 [list] [network] chromatin silencing by small RNA  (13 genes)  TAS  
GO:0030422 [list] [network] production of siRNA involved in RNA interference  (34 genes)  IGI IMP  
GO:0006342 [list] [network] chromatin silencing  (39 genes)  IMP  
GO:0009816 [list] [network] defense response to bacterium, incompatible interaction  (43 genes)  IMP  
GO:0051607 [list] [network] defense response to virus  (44 genes)  IDA  
GO:0006306 [list] [network] DNA methylation  (50 genes)  IMP  
GO:0006417 [list] [network] regulation of translation  (146 genes)  IEA  
GO:0016458 [list] [network] gene silencing  (216 genes)  IMP  
GO CC
GO:0005719 [list] [network] nuclear euchromatin  (6 genes)  IDA  
GO:0015030 [list] [network] Cajal body  (16 genes)  IDA  
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  RCA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0035197 [list] [network] siRNA binding  (5 genes)  IDA  
GO:0004521 [list] [network] endoribonuclease activity  (85 genes)  IMP  
GO:0003682 [list] [network] chromatin binding  (126 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001189613.1  NP_565633.1 
BLAST NP_001189613.1  NP_565633.1 
Orthologous [Ortholog page] AGO6 (ath)AGO9 (ath)LOC4324436 (osa)LOC4324438 (osa)LOC4335025 (osa)LOC4342886 (osa)LOC7453743 (ppo)LOC7455965 (ppo)LOC7479625 (ppo)LOC7486850 (ppo)LOC11428002 (mtr)LOC11433384 (mtr)LOC11433386 (mtr)LOC11439465 (mtr)LOC25489582 (mtr)LOC100217027 (zma)LOC100241029 (vvi)LOC100243183 (vvi)LOC100260151 (vvi)LOC100268121 (vvi)LOC100381552 (zma)LOC100382704 (zma)LOC100383316 (zma)LOC100778875 (gma)LOC100779439 (gma)LOC100812218 (gma)LOC100820376 (gma)AGO4B (sly)LOC101246438 (sly)AGO4D (sly)AGO4A (sly)AGO6 (sly)LOC103829646 (bra)LOC103845605 (bra)LOC103845607 (bra)LOC103851403 (bra)LOC103857461 (bra)LOC103864747 (bra)
Subcellular
localization
wolf
nucl 8,  cyto 2  (predict for NP_001189613.1)
nucl 8,  cyto 2  (predict for NP_565633.1)
Subcellular
localization
TargetP
other 7,  chlo 5  (predict for NP_001189613.1)
other 7,  chlo 5  (predict for NP_565633.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 RNA transport 3
ath03015 mRNA surveillance pathway 2
Genes directly connected with AGO4 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
8.3 NRPD1B nuclear RNA polymerase D1B [detail] 818591
7.0 NRPD2A nuclear RNA polymerase D2A [detail] 821960
6.6 CPSF160 cleavage and polyadenylation specificity factor 160 [detail] 835240
6.1 AGO10 Stabilizer of iron transporter SufD / Polynucleotidyl transferase [detail] 834403
6.1 BIO1 adenosylmethionine-8-amino-7-oxononanoate transaminase [detail] 835863
6.0 HEN1 double-stranded RNA binding protein-related / DsRBD protein-like protein [detail] 827839
5.9 PRMT4A protein arginine methyltransferase 4A [detail] 834961
5.1 AT5G14610 DEAD box RNA helicase family protein [detail] 831313
5.1 UK/UPRT1 uridine kinase/uracil phosphoribosyltransferase 1 [detail] 834088
Coexpressed
gene list
[Coexpressed gene list for AGO4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266314_at
266314_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266314_at
266314_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
266314_at
266314_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 817246    
Refseq ID (protein) NP_001189613.1 
NP_565633.1 


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