[←][→] ath   AT2G27840 Gene
functional annotation
Function   histone deacetylase-related / HD-like protein  
GO BP
GO:0010162 [list] [network] seed dormancy process  (32 genes)  IEP  
GO:0030422 [list] [network] production of siRNA involved in RNA interference  (34 genes)  IGI  
GO:0006325 [list] [network] chromatin organization  (338 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (35 genes)  ISS  
GO:0016787 [list] [network] hydrolase activity  (3024 genes)  IEA  
KEGG
Protein NP_001318300.1  NP_001324791.1  NP_565661.2  NP_850109.1 
BLAST NP_001318300.1  NP_001324791.1  NP_565661.2  NP_850109.1 
Orthologous [Ortholog page] LOC541932 (zma)  LOC103636374 (zma)  LOC103864807 (bra)  LOC107277645 (osa) 
Subcellular
localization
wolf
cyto 5,  nucl 2,  chlo 1,  mito 1,  extr 1,  cysk 1,  chlo_mito 1  (predict for NP_001318300.1)
nucl 5,  cyto 4  (predict for NP_001324791.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_565661.2)
nucl 4,  extr 3,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_850109.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001318300.1)
other 9  (predict for NP_001324791.1)
other 9  (predict for NP_565661.2)
other 8  (predict for NP_850109.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 9
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with HDT4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
12.5 FIB2 fibrillarin 2 [detail] 828668
11.9 AT2G20450 Ribosomal protein L14 [detail] 816564
11.8 AT5G08180 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [detail] 830714
9.7 AT3G57490 Ribosomal protein S5 family protein [detail] 824916
9.0 AT3G15460 Ribosomal RNA processing Brix domain protein [detail] 820785
8.8 AT5G65860 ankyrin repeat family protein [detail] 836715
8.0 AT5G59240 Ribosomal protein S8e family protein [detail] 836042
7.8 AT1G54770 Fcf2 pre-rRNA processing protein [detail] 841918
7.8 AT2G32220 Ribosomal L27e protein family [detail] 817781
7.8 AT4G38100 CURVATURE THYLAKOID 1D-like protein [detail] 829966
6.2 GATA17 GATA transcription factor 17 [detail] 820942
Coexpressed
gene list		 [Coexpressed gene list for HDT4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266253_at
266253_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266253_at
266253_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266253_at
266253_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817331      
Refseq ID (protein) NP_001318300.1 
NP_001324791.1 
NP_565661.2 
NP_850109.1 


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