[←][→] ath   At2g27840 Gene
functional annotation
Function   histone deacetylase-related / HD-like protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0030422 [list] [network] siRNA processing  (30 genes)  IGI  
GO:0010162 [list] [network] seed dormancy process  (49 genes)  IEP  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (16 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001318300.1  NP_001324791.1  NP_565661.2  NP_850109.1 
BLAST NP_001318300.1  NP_001324791.1  NP_565661.2  NP_850109.1 
Orthologous [Ortholog page] HD2A (gma)  LOC780626 (tae)  HDA3 (ath)  HD2C (ath)  HD2B (ath)  LOC4339823 (osa)  LOC7474933 (ppo)  LOC11434112 (mtr)  LOC11434564 (mtr)  LOC18097993 (ppo)  LOC18100075 (ppo)  LOC25487509 (mtr)  HDT6 (gma)  LOC100792094 (gma)  HDT4 (gma)  HDT2 (gma)  HDT1 (gma)  LOC101244607 (sly)  HDT3 (sly)  LOC101262270 (sly)  LOC103845525 (bra)  LOC103847362 (bra)  LOC103851455 (bra)  LOC103851458 (bra)  LOC103851750 (bra)  LOC103851751 (bra)  LOC103856522 (bra)  LOC103864807 (bra)  LOC107277645 (osa)  LOC112416804 (mtr)  LOC123050863 (tae)  LOC123066145 (tae)  LOC123071217 (tae)  LOC123075202 (tae)  LOC123161746 (tae)  LOC123183440 (tae)  LOC123408500 (hvu)  LOC123445159 (hvu)  LOC123452961 (hvu) 
Subcellular
localization
wolf
cyto 5,  nucl 2,  chlo 1,  mito 1,  extr 1,  cysk 1,  chlo_mito 1  (predict for NP_001318300.1)
nucl 5,  cyto 4  (predict for NP_001324791.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_565661.2)
nucl 4,  extr 3,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_850109.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001318300.1)
other 9  (predict for NP_001324791.1)
other 9  (predict for NP_565661.2)
other 8  (predict for NP_850109.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath03010 Ribosome 3
Genes directly connected with HDT4 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.5 FIB2 fibrillarin 2 [detail] 828668
11.8 AT5G08180 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [detail] 830714
10.9 AT3G23620 Ribosomal RNA processing Brix domain protein [detail] 821942
10.2 AT3G59670 elongation factor [detail] 825136
10.0 RPSAb 40s ribosomal protein SA B [detail] 819637
9.7 AT5G65860 ankyrin repeat family protein [detail] 836715
9.7 AT3G15460 Ribosomal RNA processing Brix domain protein [detail] 820785
9.5 AT1G08580 uncharacterized protein [detail] 837380
9.4 AT2G32220 Ribosomal L27e protein family [detail] 817781
8.5 AT4G38100 CURVATURE THYLAKOID 1D-like protein [detail] 829966
8.2 AT1G54770 Fcf2 pre-rRNA processing protein [detail] 841918
8.1 AT5G59240 Ribosomal protein S8e family protein [detail] 836042
Coexpressed
gene list		 [Coexpressed gene list for HDT4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266253_at
266253_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266253_at
266253_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266253_at
266253_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817331      
Refseq ID (protein) NP_001318300.1 
NP_001324791.1 
NP_565661.2 
NP_850109.1 


The preparation time of this page was 0.2 [sec].