ATTED-II : GeneID search result

[←][→] ath AT2G28720 Gene

functional annotation

Function

Histone superfamily protein

GO BP

GO:0006334 [list] [network] nucleosome assembly

(34 genes)

IBA

GO CC

GO:0000786 [list] [network] nucleosome	(45 genes)	IEA
GO:0005777 [list] [network] peroxisome	(325 genes)	HDA
GO:0005634 [list] [network] nucleus	(10793 genes)	IEA ISM

GO MF

GO:0046982 [list] [network] protein heterodimerization activity	(122 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2280 genes)	IBA

KEGG

Protein

NP_180440.1

BLAST

NP_180440.1

Orthologous

[Ortholog page] LOC542301 (zma) H2B-1 (sly) AT2G37470 (ath) AT3G09480 (ath) HTB9 (ath) HTB11 (ath) AT5G02570 (ath) HTB2 (ath) HTB4 (ath) HTB1 (ath) AT1G08170 (ath) LOC4324495 (osa) LOC4324500 (osa) LOC4324502 (osa) LOC4324504 (osa) LOC4324510 (osa) LOC4324512 (osa) LOC4327384 (osa) LOC4339681 (osa) LOC4345904 (osa) LOC7463471 (ppo) LOC9268195 (osa) LOC11416780 (mtr) LOC11417139 (mtr) LOC11426605 (mtr) LOC11431194 (mtr) LOC11432921 (mtr) LOC11442767 (mtr) LOC25484839 (mtr) LOC25485824 (mtr) LOC25492478 (mtr) LOC25492530 (mtr) LOC25492533 (mtr) LOC25492556 (mtr) LOC25492748 (mtr) LOC25493050 (mtr) AT3G53650 (ath) LOC100192792 (zma) LOC100193014 (zma) LOC100251955 (vvi) LOC100253395 (vvi) LOC100258812 (vvi) LOC100263369 (vvi) LOC100273491 (zma) LOC100273745 (zma) LOC100274083 (zma) LOC100305731 (gma) LOC100305866 (gma) LOC100499734 (gma) LOC100500314 (gma) LOC100501306 (zma) LOC100501458 (zma) LOC100501614 (zma) LOC100789702 (gma) LOC100793796 (gma) LOC100805396 (gma) LOC100806140 (gma) LOC100817849 (gma) LOC100820177 (gma) LOC101244346 (sly) LOC101245134 (sly) LOC101252186 (sly) LOC101253792 (sly) H2B-3 (sly) LOC101261496 (sly) LOC101264987 (sly) LOC101267024 (sly) LOC103639304 (zma) LOC103647254 (zma) LOC103647911 (zma) LOC103829764 (bra) LOC103829945 (bra) LOC103841289 (bra) LOC103845413 (bra) LOC103845511 (bra) LOC103849084 (bra) LOC103851535 (bra) LOC103856534 (bra) LOC103856593 (bra) LOC103858282 (bra) LOC103863386 (bra) LOC103864913 (bra) LOC103871565 (bra) LOC103873395 (bra) LOC104648016 (sly) LOC111828532 (gma)

Subcellular
localization
wolf

nucl 10

(predict for NP_180440.1)

Subcellular
localization
TargetP

other 9

(predict for NP_180440.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT2G28720 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.1	HMGB2	high mobility group B2	[detail]	838658
7.3	AT2G30620	winged-helix DNA-binding transcription factor family protein	[detail]	817612
6.7	AT5G49015	Expressed protein	[detail]	2746203
6.3	WRKY3	WRKY DNA-binding protein 3	[detail]	814863

Coexpressed
gene list

[Coexpressed gene list for AT2G28720]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

263412_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

263412_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

263412_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	817421
Refseq ID (protein)	NP_180440.1

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