[][] ath   AT2G29400 Gene
functional annotation
Function   type one protein phosphatase 1
GO BP
GO:0006470 [list] [network] protein dephosphorylation  (133 genes)  IGI  
GO CC
GO:0000164 [list] [network] protein phosphatase type 1 complex  (6 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA ISM  
GO MF
GO:0004722 [list] [network] protein serine/threonine phosphatase activity  (113 genes)  IBA IDA IGI  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath03015 [list] [network] mRNA surveillance pathway (115 genes)
Protein NP_180501.1 
BLAST NP_180501.1 
Orthologous [Ortholog page] LOC542269 (zma)TOPP4 (ath)TOPP9 (ath)TOPP5 (ath)TOPP7 (ath)TOPP8 (ath)TOPP6 (ath)TOPP2 (ath)TOPP3 (ath)LOC4326473 (osa)LOC4331166 (osa)LOC4332369 (osa)LOC4340228 (osa)LOC7458113 (ppo)LOC7478936 (ppo)LOC7479289 (ppo)LOC7487983 (ppo)LOC11406064 (mtr)LOC11413712 (mtr)LOC11419847 (mtr)LOC11424441 (mtr)LOC11425683 (mtr)LOC11431740 (mtr)LOC11432243 (mtr)LOC25502117 (mtr)LOC100191199 (zma)LOC100216757 (zma)LOC100217163 (zma)LOC100240794 (vvi)LOC100240815 (vvi)LOC100250219 (vvi)LOC100256994 (vvi)LOC100258649 (vvi)LOC100259840 (vvi)LOC100263930 (vvi)LOC100272981 (zma)LOC100282306 (zma)LOC100283013 (zma)LOC100284227 (zma)LOC100780047 (gma)LOC100783178 (gma)LOC100790490 (gma)LOC100791655 (gma)LOC100799218 (gma)LOC100804212 (gma)LOC100805030 (gma)LOC100807069 (gma)LOC100808597 (gma)LOC100811593 (gma)LOC100816262 (gma)LOC101243716 (sly)LOC101249363 (sly)LOC101249463 (sly)LOC101251329 (sly)LOC101254698 (sly)LOC101258308 (sly)LOC101260053 (sly)LOC103634267 (zma)LOC103635487 (zma)LOC103827974 (bra)LOC103833886 (bra)LOC103838234 (bra)LOC103845343 (bra)LOC103849914 (bra)LOC103851601 (bra)LOC103854676 (bra)LOC103856650 (bra)LOC103857886 (bra)LOC103858272 (bra)LOC103858598 (bra)LOC103859101 (bra)LOC103868042 (bra)LOC103870808 (bra)LOC103873291 (bra)LOC103874509 (bra)
Subcellular
localization
wolf
cyto 6,  nucl 2,  vacu 1,  golg 1  (predict for NP_180501.1)
Subcellular
localization
TargetP
other 6  (predict for NP_180501.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
ath04712 Circadian rhythm - plant 2
ath00270 Cysteine and methionine metabolism 2
ath03015 mRNA surveillance pathway 2
Genes directly connected with TOPP1 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
10.0 AT3G12760 defective in cullin neddylation protein [detail] 820458
9.6 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein [detail] 826726
9.0 CKA1 casein kinase alpha 1 [detail] 836873
8.6 MTN1 methylthioadenosine nucleosidase 1 [detail] 830035
8.4 ATR1 P450 reductase 1 [detail] 828554
7.4 AT3G58670 2-aminoethanethiol dioxygenase, putative (DUF1637) [detail] 825036
7.4 AT1G08210 Eukaryotic aspartyl protease family protein [detail] 837342
7.2 GP ALPHA 1 G protein alpha subunit 1 [detail] 817170
7.2 DRH1 DEAD box RNA helicase 1 [detail] 821116
7.1 AT1G55880 Pyridoxal-5'-phosphate-dependent enzyme family protein [detail] 842038
6.5 HDA05 histone deacetylase 5 [detail] 836227
6.4 SWI3B switch subunit 3 [detail] 817927
6.4 AT2G07180 Protein kinase superfamily protein [detail] 815287
6.4 AT4G17486 PPPDE putative thiol peptidase family protein [detail] 827462
Coexpressed
gene list
[Coexpressed gene list for TOPP1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266238_at
266238_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266238_at
266238_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
266238_at
266238_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 817489    
Refseq ID (protein) NP_180501.1 


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