ATTED-II : GeneID search result

[←][→] ath At2g31160 Gene

functional annotation

Function

LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)

GO BP

GO:0048834 [list] [network] specification of petal number	(2 genes)	IMP
GO:0010199 [list] [network] organ boundary specification between lateral organs and the meristem	(9 genes)	IMP
GO:0009299 [list] [network] mRNA transcription	(13 genes)	ISS
GO:0010492 [list] [network] maintenance of shoot apical meristem identity	(19 genes)	IMP
GO:0048441 [list] [network] petal development	(22 genes)	IMP
GO:0090698 [list] [network] post-embryonic plant morphogenesis	(221 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

IDA ISM TAS

GO MF

KEGG

Protein

NP_565716.1

BLAST

NP_565716.1

Orthologous

[Ortholog page] LSH10 (ath) LSH2 (ath) LSH4 (ath) LSH1 (ath) LSH6 (ath) LSH8 (ath) LSH7 (ath) LOC4328416 (osa) LOC4330024 (osa) LOC4331099 (osa) LOC4336401 (osa) LOC4338491 (osa) LOC4341811 (osa) LOC7454352 (ppo) LOC7455905 (ppo) LOC7455945 (ppo) LOC7458006 (ppo) LOC7458242 (ppo) LOC7460096 (ppo) LOC7467540 (ppo) LOC7470206 (ppo) LOC7471962 (ppo) LOC7474992 (ppo) LOC7480386 (ppo) LOC7487181 (ppo) LOC7487704 (ppo) LOC7489106 (ppo) LOC7496798 (ppo) LOC9266624 (osa) LOC11407427 (mtr) LOC11408401 (mtr) LOC11408456 (mtr) LOC11409774 (mtr) LOC11410018 (mtr) LOC11410358 (mtr) LOC11419093 (mtr) LOC11434608 (mtr) LOC18095487 (ppo) LOC18102467 (ppo) LOC25484251 (mtr) LOC25485780 (mtr) LOC25485963 (mtr) LOC25493337 (mtr) LOC25499270 (mtr) LOC25499718 (mtr) LSH9 (ath) LSH5 (ath) LOC100306082 (gma) LOC100306225 (gma) LOC100527164 (gma) LOC100527409 (gma) LOC100527554 (gma) LOC100775798 (gma) LOC100775838 (gma) LOC100778283 (gma) LOC100778886 (gma) LOC100780494 (gma) LOC100786135 (gma) LOC100789834 (gma) LOC100791424 (gma) LOC100802715 (gma) LOC100802937 (gma) LOC100803605 (gma) LOC100803965 (gma) LOC100806134 (gma) LOC100806493 (gma) LOC100806497 (gma) LOC100810350 (gma) LOC100810655 (gma) LOC100815968 (gma) TFAM1 (sly) LOC101244207 (sly) LOC101246185 (sly) LOC101247206 (sly) TFAM2 (sly) LOC101252299 (sly) LOC101253723 (sly) LOC101256738 (sly) LOC101260873 (sly) LOC101261831 (sly) LOC101262247 (sly) LOC101263979 (sly) LOC102663941 (gma) LOC103828755 (bra) LOC103832357 (bra) LOC103837296 (bra) LOC103843480 (bra) LOC103843985 (bra) LOC103845278 (bra) LOC103845279 (bra) LOC103848911 (bra) LOC103850046 (bra) LOC103851635 (bra) LOC103853147 (bra) LOC103853659 (bra) LOC103854635 (bra) LOC103858024 (bra) LOC103859037 (bra) LOC103861005 (bra) LOC103865110 (bra) LOC103865960 (bra) LOC103866652 (bra) LOC103867894 (bra) LOC103867981 (bra) LOC103874577 (bra) LOC107276238 (osa) LOC107278201 (osa) LOC107278610 (osa) LOC117125638 (bra) LOC123041251 (tae) LOC123045668 (tae) LOC123046119 (tae) LOC123049257 (tae) LOC123052627 (tae) LOC123053999 (tae) LOC123058740 (tae) LOC123074939 (tae) LOC123127737 (tae) LOC123128934 (tae) LOC123136756 (tae) LOC123137510 (tae) LOC123144860 (tae) LOC123146052 (tae) LOC123149104 (tae) LOC123159994 (tae) LOC123166451 (tae) LOC123181080 (tae) LOC123181711 (tae) LOC123185303 (tae) LOC123189888 (tae) LOC123402509 (hvu) LOC123403258 (hvu) LOC123409615 (hvu) LOC123411667 (hvu) LOC123412451 (hvu) LOC123427243 (hvu) LOC123430078 (hvu) LOC123440575 (hvu) LOC123444893 (hvu)

Subcellular
localization
wolf

nucl 10

(predict for NP_565716.1)

Subcellular
localization
TargetP

chlo 5, other 4

(predict for NP_565716.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with LSH3 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
9.9	LSH4	LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)	[detail]	821908
6.2	BOP2	Ankyrin repeat family protein / BTB/POZ domain-containing protein	[detail]	818735
6.0	LSH10	LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)	[detail]	818861
4.9	OFP7	ovate family protein 7	[detail]	816365
4.7	AT4G37810	EPIDERMAL PATTERNING FACTOR-like protein	[detail]	829937
4.2	LSH5	LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)	[detail]	28721277

Coexpressed
gene list

[Coexpressed gene list for LSH3]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

266479_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

266479_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

266479_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	817672
Refseq ID (protein)	NP_565716.1

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