[←][→] ath   At2g37040 Gene
functional annotation
Function   PHE ammonia lyase 1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0046274 [list] [network] lignin catabolic process  (1 genes)  IMP  
GO:0046244 [list] [network] salicylic acid catabolic process  (4 genes)  IMP  
GO:0009800 [list] [network] cinnamic acid biosynthetic process  (5 genes)  IEA  
GO:0009819 [list] [network] drought recovery  (12 genes)  IMP  
GO:0010224 [list] [network] response to UV-B  (75 genes)  IMP  
GO:0009699 [list] [network] phenylpropanoid biosynthetic process  (87 genes)  TAS  
GO:0009555 [list] [network] pollen development  (376 genes)  IMP  
GO:0006979 [list] [network] response to oxidative stress  (545 genes)  IEP  
GO:0009611 [list] [network] response to wounding  (816 genes)  TAS  
GO:0006952 [list] [network] defense response  (2370 genes)  IEP TAS  
GO CC
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0045548 [list] [network] phenylalanine ammonia-lyase activity  (3 genes)  IDA ISS TAS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00360 [list] [network] Phenylalanine metabolism (33 genes)
ath00940 [list] [network] Phenylpropanoid biosynthesis (128 genes)
Protein NP_181241.1 
BLAST NP_181241.1 
Orthologous [Ortholog page] LOC542819 (tae)  PAL4 (ath)  PAL2 (ath)  PAL3 (ath)  LOC4330034 (osa)  LOC4330036 (osa)  LOC4330037 (osa)  LOC4330040 (osa)  LOC4336415 (osa)  LOC4338861 (osa)  LOC7463441 (ppo)  LOC7463442 (ppo)  LOC7479878 (ppo)  LOC7486485 (ppo)  LOC9271676 (osa)  LOC11414166 (mtr)  LOC11429351 (mtr)  LOC11434138 (mtr)  LOC18100180 (ppo)  LOC25487825 (mtr)  LOC25499316 (mtr)  LOC25499317 (mtr)  PAL2.1 (gma)  PAL3.1 (gma)  PAL1.3 (gma)  PAL1.2 (gma)  PAL2.4 (gma)  PAL2.3 (gma)  PAL1.1 (gma)  PAL2.2 (gma)  LOC101243631 (sly)  LOC101243656 (sly)  PAL3 (sly)  PAL5 (sly)  LOC101246969 (sly)  LOC101247265 (sly)  PAL2 (sly)  LOC101253989 (sly)  LOC101261892 (sly)  LOC103829920 (bra)  LOC103841251 (bra)  LOC103863433 (bra)  LOC103864245 (bra)  LOC103865574 (bra)  LOC103867229 (bra)  LOC103870475 (bra)  LOC112941051 (sly)  LOC120576914 (mtr)  LOC123044473 (tae)  LOC123046102 (tae)  LOC123046106 (tae)  LOC123052332 (tae)  LOC123052335 (tae)  LOC123053982 (tae)  LOC123053983 (tae)  LOC123053984 (tae)  LOC123053985 (tae)  LOC123053986 (tae)  LOC123057580 (tae)  LOC123064383 (tae)  LOC123105222 (tae)  LOC123113082 (tae)  LOC123113856 (tae)  LOC123113857 (tae)  LOC123137535 (tae)  LOC123137536 (tae)  LOC123144878 (tae)  LOC123180007 (tae)  LOC123187336 (tae)  LOC123189878 (tae)  LOC123189879 (tae)  LOC123189880 (tae)  LOC123401027 (hvu)  LOC123401735 (hvu)  LOC123404696 (hvu)  LOC123425614 (hvu)  LOC123425618 (hvu)  LOC123425729 (hvu)  LOC123425763 (hvu)  LOC123425766 (hvu)  LOC123425768 (hvu)  LOC123425770 (hvu)  LOC123425773 (hvu)  LOC123427251 (hvu)  LOC123427252 (hvu)  LOC123427253 (hvu)  LOC123427254 (hvu)  LOC123439223 (hvu) 
Subcellular
localization
wolf
chlo 2,  plas 2,  E.R. 2,  E.R._plas 2,  nucl 1,  cyto 1,  mito 1,  extr 1,  vacu 1,  cyto_nucl 1  (predict for NP_181241.1)
Subcellular
localization
TargetP
other 9  (predict for NP_181241.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 10
ath01230 Biosynthesis of amino acids 7
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
ath00941 Flavonoid biosynthesis 4
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
Genes directly connected with PAL1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
20.8 PAL2 phenylalanine ammonia-lyase 2 [detail] 824493
18.7 C4H cinnamate-4-hydroxylase [detail] 817599
16.1 4CL1 4-coumarate:CoA ligase 1 [detail] 841593
12.8 AT5G24760 GroES-like zinc-binding dehydrogenase family protein [detail] 832545
12.7 AT1G22410 Class-II DAHP synthetase family protein [detail] 838847
11.9 AT1G06550 ATP-dependent caseinolytic (Clp) protease/crotonase family protein [detail] 837166
11.6 MAT3 methionine adenosyltransferase 3 [detail] 818260
11.3 AT2G45300 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta [detail] 819138
11.2 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [detail] 834951
8.5 ATCAD4 GroES-like zinc-binding alcohol dehydrogenase family protein [detail] 821479
8.3 CM1 chorismate mutase 1 [detail] 822573
6.5 ADT5 arogenate dehydratase 5 [detail] 832326
4.8 ABCI19 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 839376
3.7 AT2G43120 RmlC-like cupins superfamily protein [detail] 818914
Coexpressed
gene list		 [Coexpressed gene list for PAL1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
263845_at
263845_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
263845_at
263845_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
263845_at
263845_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818280      
Refseq ID (protein) NP_181241.1 


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