[←][→] ath   At2g39140 Gene
functional annotation
Function   pseudouridine synthase family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000488 [list] [network] maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)  (1 genes)  IMP  
GO:0000489 [list] [network] maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)  (1 genes)  IMP  
GO:0001522 [list] [network] pseudouridine synthesis  (9 genes)  IEA  
GO:0032544 [list] [network] plastid translation  (21 genes)  IMP  
GO CC
GO:0009501 [list] [network] amyloplast  (3 genes)  TAS  
GO:0009507 [list] [network] chloroplast  (5004 genes)  IDA ISM  
GO:0009536 [list] [network] plastid  (5425 genes)  IMP  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (19 genes)  TAS  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
KEGG
Protein NP_001323702.1  NP_181447.2 
BLAST NP_001323702.1  NP_181447.2 
Orthologous [Ortholog page] LOC4331652 (osa)  LOC7479859 (ppo)  LOC25484927 (mtr)  LOC100808046 (gma)  LOC101243758 (sly)  LOC103867060 (bra)  LOC123084911 (tae)  LOC123093178 (tae)  LOC123098445 (tae)  LOC123449471 (hvu) 
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for NP_001323702.1)
chlo 8,  nucl 1,  mito 1,  pero 1  (predict for NP_181447.2)
Subcellular
localization
TargetP
chlo 6,  scret 5  (predict for NP_001323702.1)
chlo 6,  scret 5  (predict for NP_181447.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with SVR1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.8 AT4G26370 antitermination NusB domain-containing protein [detail] 828743
8.6 AT3G18680 Amino acid kinase family protein [detail] 821399
8.2 RAP RAP [detail] 817747
Coexpressed
gene list		 [Coexpressed gene list for SVR1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267018_at
267018_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267018_at
267018_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267018_at
267018_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818500      
Refseq ID (protein) NP_001323702.1 
NP_181447.2 


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