[←][→] ath   At2g39340 Gene
functional annotation
Function   SAC3/GANP/Nin1/mts3/eIF-3 p25 family    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000380 [list] [network] alternative mRNA splicing, via spliceosome  (10 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (191 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_181466.2 
BLAST NP_181466.2 
Orthologous [Ortholog page] LOC4327459 (osa)  LOC7457903 (ppo)  LOC7489613 (ppo)  LOC9270017 (osa)  LOC11419986 (mtr)  LOC100778996 (gma)  LOC100804185 (gma)  LOC101254205 (sly)  LOC103865711 (bra)  LOC103867052 (bra)  LOC123059285 (tae)  LOC123062515 (tae)  LOC123071333 (tae)  LOC123079667 (tae)  LOC123136202 (tae)  LOC123182283 (tae)  LOC123444960 (hvu)  LOC123445262 (hvu) 
Subcellular
localization
wolf
nucl 10  (predict for NP_181466.2)
Subcellular
localization
TargetP
other 8  (predict for NP_181466.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
Genes directly connected with SAC3A on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.2 INO80 DNA helicase INO80-like protein [detail] 824897
9.3 PTM PHD type transcription factor with transmembrane domain protein (PTM) [detail] 833475
9.2 SUA suppressor of abi3-5 [detail] 824590
8.8 FCA flowering time control protein FCA [detail] 827323
8.1 SAC3B SAC3/GANP/Nin1/mts3/eIF-3 p25 family [detail] 819803
7.3 AT1G50410 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [detail] 841463
7.1 AT5G55600 Agenet and bromo-adjacent homology (BAH) domain-containing protein [detail] 835654
6.7 CLC-D chloride channel D [detail] 832693
5.9 AT5G04090 histidine-tRNA ligase [detail] 830288
Coexpressed
gene list		 [Coexpressed gene list for SAC3A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267015_at
267015_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267015_at
267015_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267015_at
267015_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818519      
Refseq ID (protein) NP_181466.2 


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